RNA–Protein interactions for RNA: ENST00000550160.5

CNOT2-223, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 5

Gene CNOT2, Length 993 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-223	ENST00000550160	KLRC3	Q07444	240 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	ZNF543	Q08ER8	600 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	ZYX	Q15942	572 aa	Known RBP	13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	TMTC3	Q6ZXV5	915 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	ERO1B	Q86YB8	467 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	SIAH1	Q8IUQ4	282 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	ACER1	Q8TDN7	264 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	RNF26	Q9BY78	433 aa	Predicted RBP	13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	ORC3	Q9UBD5	711 aa	Predicted RBP	13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	SNCAIP	Q9Y6H5	919 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	ZHX2	Q9Y6X8	837 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	PAPPA2	Q9BXP8	1791 aa		13.49	□□□□□ -0.25
CNOT2-223	ENST00000550160	ATAD5	Q96QE3	1844 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	STK36	Q9NRP7	1315 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160		A0A1W2PRG0	241 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	PALM3	A6NDB9	673 aa	Predicted RBP	13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	KIF3C	O14782	793 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	BMP3	P12645	472 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	SMARCA1	P28370	1054 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	ECE1	P42892	770 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	PPAT	Q06203	517 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	SPP2	Q13103	211 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	IK	Q13123	557 aa	Predicted RBP	13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	USP17L2	Q6R6M4	530 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	SMARCC2	Q8TAQ2	1214 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	DDX11	Q96FC9	970 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	SLC26A6	Q9BXS9	759 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	TMOD4	Q9NZQ9	345 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	MAD2L2	Q9UI95	211 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	MYH4	Q9Y623	1939 aa		13.48	□□□□□ -0.25
CNOT2-223	ENST00000550160	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	SPDYE5	A6NIY4	337 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	TRIM75P	A6NK02	468 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	UBE2Q2L	H0YL09	131 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	JAK2	O60674	1132 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	PLEKHA8P1	O95397	391 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	FMNL1	O95466	1100 aa	Predicted RBP	13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	CTDNEP1	O95476	244 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	ITGBL1	O95965	494 aa	Predicted RBP	13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	XBP1	P17861	261 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	BACE1	P56817	501 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	MTMR2	Q13614	643 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	NTRK3	Q16288	839 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	LDLRAD1	Q5T700	205 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	CCDC84	Q86UT8	332 aa	Predicted RBP	13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	CCDC82	Q8N4S0	544 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	SLC10A4	Q96EP9	437 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	SPZ1	Q9BXG8	430 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	ELP3	Q9H9T3	547 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	GPCPD1	Q9NPB8	672 aa		13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	SEC63	Q9UGP8	760 aa	Known RBP	13.47	□□□□□ -0.25
CNOT2-223	ENST00000550160	WDR46	O15213	610 aa	Known RBP	13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	TOMM70	O94826	608 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	DEXI	O95424	95 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	GOLGA8H	P0CJ92	632 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	TRIM29	Q14134	588 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	MOB2	Q70IA6	237 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	FAM160B2	Q86V87	743 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	REM2	Q8IYK8	340 aa	Predicted RBP	13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	SPICE1	Q8N0Z3	855 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	STAG2	Q8N3U4	1231 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	SRBD1	Q8N5C6	995 aa	Known RBP	13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	CHURC1	Q8WUH1	139 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	SPOCK2	Q92563	424 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	PHKB	Q93100	1093 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	RRP36	Q96EU6	259 aa	Known RBP	13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	OTUD5	Q96G74	571 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	CHMP5	Q9NZZ3	219 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	AFG3L2	Q9Y4W6	797 aa		13.46	□□□□□ -0.25
CNOT2-223	ENST00000550160	CNTNAP5	Q8WYK1	1306 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	PRPF3	O43395	683 aa	Known RBP	13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	STAT2	P52630	851 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	NUCB2	P80303	420 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	FMR1	Q06787	632 aa	Known RBP eCLIP	13.45	□□□□□ -0.26	6e-8	■■■■■ 35.8
CNOT2-223	ENST00000550160	PPIL2	Q13356	520 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	FAM83B	Q5T0W9	1011 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	LARP1B	Q659C4	914 aa	Known RBP	13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	KCTD1	Q719H9	257 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	OPTN	Q96CV9	577 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	CLMN	Q96JQ2	1002 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	C12orf42	Q96LP6	360 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	FEM1B	Q9UK73	627 aa		13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160		V9GY48	417 aa	Predicted RBP	13.45	□□□□□ -0.26
CNOT2-223	ENST00000550160	TMEM232	C9JQI7	657 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160		H3BQV1	296 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	CXCL11	O14625	94 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	PPFIA3	O75145	1194 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	HMGCS2	P54868	508 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	FUT2	Q10981	343 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	FSTL1	Q12841	308 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	SH3D19	Q5HYK7	790 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	IFFO2	Q5TF58	517 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	RASGRP2	Q7LDG7	609 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	NBPF11	Q86T75	865 aa		13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	CMTR1	Q8N1G2	835 aa	Known RBP	13.44	□□□□□ -0.26
CNOT2-223	ENST00000550160	RGS22	Q8NE09	1264 aa		13.44	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms