RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 FAM47AQ5JRC9 791 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 ICE2Q659A1 982 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 TMCO3Q6UWJ1 677 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 AMIGO3Q86WK7 504 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 FAM200AQ8TCP9 573 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 GOLGA1Q92805 767 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 FEZ2Q9UHY8 353 aaPredicted RBP9.63□□□□□ -0.87
CLIP1-218ENST00000545889 KCNG1Q9UIX4 513 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 PLEKHG2Q9H7P9 1386 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 N4BP3O15049 544 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 PRR29P0C7W0 189 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 RPS6KB1P23443 525 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 MECOMQ03112 1051 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 STRN3Q13033 797 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 NAA30Q147X3 362 aaPredicted RBP9.63□□□□□ -0.87
CLIP1-218ENST00000545889 ABI1Q8IZP0 508 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 CCDC113Q9H0I3 377 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 AP5M1Q9H0R1 490 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 TRMT1Q9NXH9 659 aaKnown RBP9.63□□□□□ -0.87
CLIP1-218ENST00000545889 CLIP2Q9UDT6 1046 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 DDX39AO00148 427 aaKnown RBP9.63□□□□□ -0.87
CLIP1-218ENST00000545889 ERLIN1O75477 346 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 CYP21A2P08686 494 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 IREB2P48200 963 aaKnown RBP9.63□□□□□ -0.87
CLIP1-218ENST00000545889 GYS2P54840 703 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 TMC4Q7Z404 712 aa9.63□□□□□ -0.87
CLIP1-218ENST00000545889 ARHGEF35A5YM69 484 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 DTHD1Q6ZMT9 781 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 ILDR1Q86SU0 546 aaPredicted RBP9.62□□□□□ -0.87
CLIP1-218ENST00000545889 MAP4K1Q92918 833 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 CHAMP1Q96JM3 812 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 DSCC1Q9BVC3 393 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 TRPC3Q13507 836 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 RTKN2Q8IZC4 609 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 CD2BP2O95400 341 aaKnown RBP9.62□□□□□ -0.87
CLIP1-218ENST00000545889 SYKP43405 635 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 CACNB3P54284 484 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 TXNRD3Q86VQ6 643 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 CDAN1Q8IWY9 1227 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 TRPC6Q9Y210 931 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 MRC1P22897 1456 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 OSBPP22059 807 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 CASQ1P31415 396 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 MCM7P33993 719 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 SKIV2LQ15477 1246 aaKnown RBP9.62□□□□□ -0.87
CLIP1-218ENST00000545889 ISM2Q6H9L7 571 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 METTL13Q8N6R0 699 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 TBC1D16Q8TBP0 767 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 SNX21Q969T3 373 aa9.62□□□□□ -0.87
CLIP1-218ENST00000545889 RBM28Q9NW13 759 aaKnown RBP9.62□□□□□ -0.87
CLIP1-218ENST00000545889 GEMIN8Q9NWZ8 242 aaKnown RBP9.62□□□□□ -0.87
CLIP1-218ENST00000545889 POLRMTO00411 1230 aaKnown RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 SLFN14P0C7P3 912 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 DPEP1P16444 411 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 PTPN14Q15678 1187 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 IL25Q9H293 177 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 TMEM63CQ9P1W3 806 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 JRKLQ9Y4A0 524 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 TESPA1A2RU30 521 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 GRIN3BO60391 1043 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 KRT2P35908 639 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 GJC1P36383 396 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 PPARAQ07869 468 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 SYT10Q6XYQ8 523 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 MXD3Q9BW11 206 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 ZSCAN16Q9H4T2 348 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 RNF216Q9NWF9 866 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 ONECUT3O60422 494 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 EEF2P13639 858 aaKnown RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 PLCB3Q01970 1234 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 PPP2R5AQ15172 486 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 CERKLQ49MI3 558 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 SLC10A5Q5PT55 438 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 PROM2Q8N271 834 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 GPBP1L1Q9HC44 474 aaPredicted RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 INCENPQ9NQS7 918 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 ST7Q9NRC1 585 aa9.61□□□□□ -0.87
CLIP1-218ENST00000545889 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.61□□□□□ -0.87
CLIP1-218ENST00000545889 STK25O00506 426 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 KIF4BQ2VIQ3 1234 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 SP8Q8IXZ3 490 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 DYDC1Q8WWB3 177 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 CRAMP1Q96RY5 1269 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 PNMA2Q9UL42 364 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 PARP4Q9UKK3 1724 aaKnown RBP9.6□□□□□ -0.87
CLIP1-218ENST00000545889 TRIM66O15016 1216 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 SEMA3EO15041 775 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 STX10O60499 249 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 CSPG5O95196 566 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 CAPN2P17655 700 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 TFAP4Q01664 338 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 WDR44Q5JSH3 913 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 CEP135Q66GS9 1140 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 HAUS3Q68CZ6 603 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 PROCA1Q8NCQ7 364 aaPredicted RBP9.6□□□□□ -0.87
CLIP1-218ENST00000545889 ANO3Q9BYT9 981 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 DDX19AQ9NUU7 478 aaKnown RBP9.6□□□□□ -0.87
CLIP1-218ENST00000545889 COL16A1Q07092 1604 aaPredicted RBP9.6□□□□□ -0.87
CLIP1-218ENST00000545889 RGPD1P0DJD0 1748 aa9.6□□□□□ -0.87
CLIP1-218ENST00000545889 PALM3A6NDB9 673 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms