RNA–Protein interactions for RNA: ENST00000544363.5

CCM2-219, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,620 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-219ENST00000544363 RIOX1Q9H6W3 641 aa35.16■■■■□ 3.22
CCM2-219ENST00000544363 GPCPD1Q9NPB8 672 aa35.16■■■■□ 3.22
CCM2-219ENST00000544363 VPS54Q9P1Q0 977 aa35.16■■■■□ 3.22
CCM2-219ENST00000544363 KCNJ14Q9UNX9 436 aa35.16■■■■□ 3.22
CCM2-219ENST00000544363 NCLP19338 710 aaKnown RBP35.15■■■■□ 3.22
CCM2-219ENST00000544363 KRT85P78386 507 aa35.15■■■■□ 3.22
CCM2-219ENST00000544363 BRAPQ7Z569 592 aa35.15■■■■□ 3.22
CCM2-219ENST00000544363 UBA5Q9GZZ9 404 aa35.15■■■■□ 3.22
CCM2-219ENST00000544363 LMBRD1Q9NUN5 540 aa35.15■■■■□ 3.22
CCM2-219ENST00000544363 TMX2Q9Y320 296 aa35.15■■■■□ 3.22
CCM2-219ENST00000544363 KIF28PB7ZC32 967 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 SAFBQ15424 915 aaKnown RBP eCLIP35.14■■■■□ 3.22
CCM2-219ENST00000544363 SUPT20HL1Q3ZLR7 823 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 SHISA4Q96DD7 197 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 ZNF112Q9UJU3 913 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 RAD21O60216 631 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 PRPF40AO75400 957 aaKnown RBP35.14■■■■□ 3.22
CCM2-219ENST00000544363 SLC1A4P43007 532 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 SULF1Q8IWU6 871 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 ACER1Q8TDN7 264 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 GMCL1Q96IK5 515 aa35.14■■■■□ 3.22
CCM2-219ENST00000544363 ATAD5Q96QE3 1844 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 IQCA1LA6NCM1 817 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 NDUFB10O96000 172 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 ECE1P42892 770 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 KCTD1Q719H9 257 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 TMEM87AQ8NBN3 555 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 ZC3H15Q8WU90 426 aaKnown RBP35.13■■■■□ 3.21
CCM2-219ENST00000544363 RRP36Q96EU6 259 aaKnown RBP35.13■■■■□ 3.21
CCM2-219ENST00000544363 PHF20Q9BVI0 1012 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 GDPD2Q9HCC8 539 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 FRMD4AQ9P2Q2 1039 aaPredicted RBP35.13■■■■□ 3.21
CCM2-219ENST00000544363 SCN4AP35499 1836 aa35.13■■■■□ 3.21
CCM2-219ENST00000544363 VEGFAP15692 232 aaPredicted RBP35.12■■■■□ 3.21
CCM2-219ENST00000544363 U2AF2P26368 475 aaKnown RBP eCLIP35.12■■■■□ 3.21
CCM2-219ENST00000544363 GNL2Q13823 731 aaKnown RBP35.11■■■■□ 3.21
CCM2-219ENST00000544363 TTBK2Q6IQ55 1244 aa35.11■■■■□ 3.21
CCM2-219ENST00000544363 SH2D4AQ9H788 454 aa35.11■■■■□ 3.21
CCM2-219ENST00000544363 VAT1LQ9HCJ6 419 aa35.11■■■■□ 3.21
CCM2-219ENST00000544363 SH3GLB2Q9NR46 395 aa35.11■■■■□ 3.21
CCM2-219ENST00000544363 ATL3Q6DD88 541 aa35.1■■■■□ 3.21
CCM2-219ENST00000544363 USP48Q86UV5 1035 aa35.1■■■■□ 3.21
CCM2-219ENST00000544363 DIS3L2Q8IYB7 885 aaKnown RBP35.1■■■■□ 3.21
CCM2-219ENST00000544363 TAF1DQ9H5J8 278 aaPredicted RBP35.1■■■■□ 3.21
CCM2-219ENST00000544363 GOPCQ9HD26 462 aa35.1■■■■□ 3.21
CCM2-219ENST00000544363 SSC5DA1L4H1 1573 aa35.1■■■■□ 3.21
CCM2-219ENST00000544363 MYH15Q9Y2K3 1946 aa35.1■■■■□ 3.21
CCM2-219ENST00000544363 FIBPO43427 364 aa35.1■■■■□ 3.21
CCM2-219ENST00000544363 INPP5BP32019 993 aa35.1■■■■□ 3.21
CCM2-219ENST00000544363 CSPP1Q1MSJ5 1256 aa35.1■■■■□ 3.21
CCM2-219ENST00000544363 ZNF396Q96N95 335 aaPredicted RBP35.1■■■■□ 3.21
CCM2-219ENST00000544363 FOXP1Q9H334 677 aaPredicted RBP35.1■■■■□ 3.21
CCM2-219ENST00000544363 TFIP11Q9UBB9 837 aaKnown RBP35.1■■■■□ 3.21
CCM2-219ENST00000544363 POTECB2RU33 542 aa35.09■■■■□ 3.21
CCM2-219ENST00000544363 PIGSQ96S52 555 aa35.09■■■■□ 3.21
CCM2-219ENST00000544363 ANP32EQ9BTT0 268 aa35.09■■■■□ 3.21
CCM2-219ENST00000544363 SEC63Q9UGP8 760 aaKnown RBP35.09■■■■□ 3.21
CCM2-219ENST00000544363 CFAP45Q9UL16 551 aa35.09■■■■□ 3.21
CCM2-219ENST00000544363 WDR90Q96KV7 1748 aa35.09■■■■□ 3.21
CCM2-219ENST00000544363 BTBD18B2RXH4 712 aa35.08■■■■□ 3.21
CCM2-219ENST00000544363 WRNIP1Q96S55 665 aa35.08■■■■□ 3.21
CCM2-219ENST00000544363 SCAND2PQ9GZW5 306 aaPredicted RBP35.08■■■■□ 3.21
CCM2-219ENST00000544363 ISY1Q9ULR0 285 aaKnown RBP35.08■■■■□ 3.21
CCM2-219ENST00000544363 ADM5C9JUS6 153 aa35.07■■■■□ 3.21
CCM2-219ENST00000544363 MYSM1Q5VVJ2 828 aa35.07■■■■□ 3.21
CCM2-219ENST00000544363 KRT26Q7Z3Y9 468 aa35.07■■■■□ 3.21
CCM2-219ENST00000544363 HOMER1Q86YM7 354 aa35.07■■■■□ 3.21
CCM2-219ENST00000544363 ADGRF4Q8IZF3 695 aa35.07■■■■□ 3.21
CCM2-219ENST00000544363 GPKOWQ92917 476 aaPredicted RBP eCLIP35.07■■■■□ 3.21
CCM2-219ENST00000544363 TRAK2O60296 914 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 BMP3P12645 472 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 WWC2Q6AWC2 1192 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 CCDC84Q86UT8 332 aaPredicted RBP35.06■■■■□ 3.2
CCM2-219ENST00000544363 SCYL3Q8IZE3 742 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 FAM177A1Q8N128 213 aaPredicted RBP35.06■■■■□ 3.2
CCM2-219ENST00000544363 KLRG1Q96E93 195 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 VCPKMTQ9H867 229 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 JMJD4Q9H9V9 463 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 BARHL2Q9NY43 387 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 SLC16A2P36021 539 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 SKOR2Q2VWA4 1001 aaPredicted RBP35.06■■■■□ 3.2
CCM2-219ENST00000544363 HEATR3Q7Z4Q2 680 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 GLIS2Q9BZE0 524 aaPredicted RBP35.06■■■■□ 3.2
CCM2-219ENST00000544363 BRMS1Q9HCU9 246 aa35.06■■■■□ 3.2
CCM2-219ENST00000544363 KRT2P35908 639 aa35.05■■■■□ 3.2
CCM2-219ENST00000544363 NLRP5P59047 1200 aa35.05■■■■□ 3.2
CCM2-219ENST00000544363 NOSTRINQ8IVI9 506 aa35.05■■■■□ 3.2
CCM2-219ENST00000544363 NUP88Q99567 741 aaPredicted RBP35.05■■■■□ 3.2
CCM2-219ENST00000544363 DOCK1Q14185 1865 aa35.05■■■■□ 3.2
CCM2-219ENST00000544363 STXBP3O00186 592 aa35.04■■■■□ 3.2
CCM2-219ENST00000544363 NPY5RQ15761 445 aa35.04■■■■□ 3.2
CCM2-219ENST00000544363 KIAA1755Q5JYT7 1200 aa35.04■■■■□ 3.2
CCM2-219ENST00000544363 PNMA8AQ86V59 439 aaPredicted RBP35.04■■■■□ 3.2
CCM2-219ENST00000544363 CCDC148Q8NFR7 591 aa35.04■■■■□ 3.2
CCM2-219ENST00000544363 OXER1Q8TDS5 423 aa35.04■■■■□ 3.2
CCM2-219ENST00000544363 MTMR8Q96EF0 704 aa35.04■■■■□ 3.2
CCM2-219ENST00000544363 FZD1Q9UP38 647 aa35.04■■■■□ 3.2
CCM2-219ENST00000544363 EAPPQ56P03 285 aaPredicted RBP35.03■■■■□ 3.2
CCM2-219ENST00000544363 SPICE1Q8N0Z3 855 aa35.03■■■■□ 3.2
CCM2-219ENST00000544363 USP28Q96RU2 1077 aa35.03■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms