RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 BTDP43251 543 aa20.49■□□□□ 0.87
VIM-209ENST00000544301 GOLGA8FQ08AF8 430 aa20.49■□□□□ 0.87
VIM-209ENST00000544301 GOLGA8DPQ0D2H9 430 aa20.49■□□□□ 0.87
VIM-209ENST00000544301 SLC35G1Q2M3R5 365 aa20.49■□□□□ 0.87
VIM-209ENST00000544301 ONECUT3O60422 494 aaPredicted RBP20.48■□□□□ 0.87
VIM-209ENST00000544301 SERPINB2P05120 415 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 ST5P78524 1137 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 CUL4BQ13620 913 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 CERS3Q8IU89 383 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 C4orf32Q8N8J7 132 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 RBM17Q96I25 401 aaKnown RBP20.48■□□□□ 0.87
VIM-209ENST00000544301 GGA1Q9UJY5 639 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 TYW1BQ6NUM6 668 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 IQUBQ8NA54 791 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 TMEM47Q9BQJ4 181 aa20.48■□□□□ 0.87
VIM-209ENST00000544301 UBR3Q6ZT12 1888 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 GPR75-ASB3A0A0A6YYF3 556 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 M0R2N6 131 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 SPATA1Q5VX52 437 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 ARL6IP4Q66PJ3 421 aaKnown RBP20.47■□□□□ 0.87
VIM-209ENST00000544301 SEPT12Q8IYM1 358 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 CYTH3O43739 400 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 MEX3CQ5U5Q3 659 aaKnown RBP20.47■□□□□ 0.87
VIM-209ENST00000544301 SPECC1LQ69YQ0 1117 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 PDXDC2PQ6P474 469 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 TMEM139Q8IV31 216 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 STX8Q9UNK0 236 aa20.47■□□□□ 0.87
VIM-209ENST00000544301 CDK5RAP2Q96SN8 1893 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 PALM3A6NDB9 673 aaPredicted RBP20.46■□□□□ 0.87
VIM-209ENST00000544301 PPP1R3GB7ZBB8 358 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 CCP110O43303 1012 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 NR1I3Q14994 352 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 WWC2Q6AWC2 1192 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 KLHL10Q6JEL2 608 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 TEX11Q8IYF3 940 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 PDCL2Q8N4E4 241 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 RASGRP4Q8TDF6 673 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 STAMQ92783 540 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 PYM1Q9BRP8 204 aaKnown RBP20.46■□□□□ 0.87
VIM-209ENST00000544301 ZNF287Q9HBT7 754 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 SYNRGQ9UMZ2 1314 aa20.46■□□□□ 0.87
VIM-209ENST00000544301 LONP1P36776 959 aaKnown RBP20.45■□□□□ 0.86
VIM-209ENST00000544301 CDK8P49336 464 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 GLIPR1L2Q4G1C9 344 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 C16orf86Q6ZW13 317 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 ARID3AQ99856 593 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 CCDC94Q9BW85 323 aaPredicted RBP20.45■□□□□ 0.86
VIM-209ENST00000544301 A0A1B0GTH6 734 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 BBOX1O75936 387 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 STX17P56962 302 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 NAA30Q147X3 362 aaPredicted RBP20.45■□□□□ 0.86
VIM-209ENST00000544301 SMYD4Q8IYR2 804 aaPredicted RBP20.45■□□□□ 0.86
VIM-209ENST00000544301 DAGLBQ8NCG7 672 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 BARHL2Q9NY43 387 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 PODXL2Q9NZ53 605 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 PCDHA6Q9UN73 950 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 MTMR7Q9Y216 660 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 PCDHA8Q9Y5H6 950 aa20.45■□□□□ 0.86
VIM-209ENST00000544301 AFF2P51816 1311 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 SNED1Q8TER0 1413 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 STXBP3O00186 592 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 TUBB4AP04350 444 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 APTXQ7Z2E3 356 aaKnown RBP20.44■□□□□ 0.86
VIM-209ENST00000544301 FCHSD1Q86WN1 690 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 MTRQ99707 1265 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 LZTS2Q9BRK4 669 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 BLZF1Q9H2G9 400 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 POLLQ9UGP5 575 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 CCDC194A0A1B0GVG4 234 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 PLCG2P16885 1265 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 RHBDL3P58872 404 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 CDKAL1Q5VV42 579 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 GALNT17Q6IS24 598 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 SYT10Q6XYQ8 523 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 HEATR3Q7Z4Q2 680 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 TC2NQ8N9U0 490 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 CCDC148Q8NFR7 591 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 TBC1D16Q8TBP0 767 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 FAM163AQ96GL9 167 aaPredicted RBP20.44■□□□□ 0.86
VIM-209ENST00000544301 EYA3Q99504 573 aa20.44■□□□□ 0.86
VIM-209ENST00000544301 DDX60LQ5H9U9 1706 aaKnown RBP20.44■□□□□ 0.86
VIM-209ENST00000544301 FLT1P17948 1338 aa20.43■□□□□ 0.86
VIM-209ENST00000544301 ARHGAP6O43182 974 aa20.43■□□□□ 0.86
VIM-209ENST00000544301 GTPBP6O43824 516 aaPredicted RBP20.43■□□□□ 0.86
VIM-209ENST00000544301 HOXA10P31260 410 aaPredicted RBP20.43■□□□□ 0.86
VIM-209ENST00000544301 MFSD14BQ5SR56 506 aa20.43■□□□□ 0.86
VIM-209ENST00000544301 NEDD1Q8NHV4 660 aa20.43■□□□□ 0.86
VIM-209ENST00000544301 ZNF215Q9UL58 517 aaPredicted RBP20.43■□□□□ 0.86
VIM-209ENST00000544301 GOLGA8HP0CJ92 632 aa20.42■□□□□ 0.86
VIM-209ENST00000544301 REXO1L1PQ8IX06 675 aa20.42■□□□□ 0.86
VIM-209ENST00000544301 BAG1Q99933 345 aaPredicted RBP20.42■□□□□ 0.86
VIM-209ENST00000544301 KLRF2D3W0D1 207 aa20.42■□□□□ 0.86
VIM-209ENST00000544301 ADKP55263 362 aaKnown RBP20.42■□□□□ 0.86
VIM-209ENST00000544301 DDR1Q08345 913 aa20.42■□□□□ 0.86
VIM-209ENST00000544301 PPP4R3BQ5MIZ7 849 aa20.42■□□□□ 0.86
VIM-209ENST00000544301 GAKO14976 1311 aa20.42■□□□□ 0.86
VIM-209ENST00000544301 CDC25AP30304 524 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 RASGRP2Q7LDG7 609 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 HOMER1Q86YM7 354 aa20.41■□□□□ 0.86
VIM-209ENST00000544301 SLF2Q8IX21 1173 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms