RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PARP3Q9Y6F1 533 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 G3V3G9 751 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 PLSCR1O15162 318 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 NT5C2P49902 561 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 DCAF8Q5TAQ9 597 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 TMC6Q7Z403 805 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 ELOA2Q8IYF1 753 aaPredicted RBP18.62■□□□□ 0.57
COL4A1-204ENST00000543140 FANCLQ9NW38 375 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 PCDHA4Q9UN74 947 aa18.62■□□□□ 0.57
COL4A1-204ENST00000543140 TERF1P54274 439 aa18.61■□□□□ 0.57
COL4A1-204ENST00000543140 PDE6BP35913 854 aa18.61■□□□□ 0.57
COL4A1-204ENST00000543140 HOMER1Q86YM7 354 aa18.61■□□□□ 0.57
COL4A1-204ENST00000543140 VAT1LQ9HCJ6 419 aa18.61■□□□□ 0.57
COL4A1-204ENST00000543140 DDX4Q9NQI0 724 aaKnown RBP18.61■□□□□ 0.57
COL4A1-204ENST00000543140 SH3GLB2Q9NR46 395 aa18.61■□□□□ 0.57
COL4A1-204ENST00000543140 SKILP12757 684 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 ALDH1B1P30837 517 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 SARSP49591 514 aaKnown RBP18.6■□□□□ 0.57
COL4A1-204ENST00000543140 IL17AQ16552 155 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 KANK3Q6NY19 840 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 STAMQ92783 540 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 DPF2Q92785 391 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 KCNQ5Q9NR82 932 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 SERPINC1P01008 464 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 PARP1P09874 1014 aaKnown RBP18.6■□□□□ 0.57
COL4A1-204ENST00000543140 NT5DC1Q5TFE4 455 aa18.6■□□□□ 0.57
COL4A1-204ENST00000543140 ZNF219Q9P2Y4 722 aaPredicted RBP18.6■□□□□ 0.57
COL4A1-204ENST00000543140 COL11A2P13942 1736 aaPredicted RBP18.59■□□□□ 0.57
COL4A1-204ENST00000543140 SLFN14P0C7P3 912 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 TRAPPC10P48553 1259 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 EIF6P56537 245 aaKnown RBP18.59■□□□□ 0.57
COL4A1-204ENST00000543140 FMR1Q06787 632 aaKnown RBP eCLIP18.59■□□□□ 0.57
COL4A1-204ENST00000543140 MORC3Q14149 939 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 PTPN21Q16825 1174 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 TRMT44Q8IYL2 757 aaKnown RBP18.59■□□□□ 0.57
COL4A1-204ENST00000543140 PAGE5Q96GU1 130 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 C16orf45Q96MC5 204 aaPredicted RBP18.59■□□□□ 0.57
COL4A1-204ENST00000543140 TMX4Q9H1E5 349 aaPredicted RBP18.59■□□□□ 0.57
COL4A1-204ENST00000543140 DBNDD1Q9H9R9 158 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 USP40Q9NVE5 1235 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 MORC2Q9Y6X9 1032 aaPredicted RBP18.59■□□□□ 0.57
COL4A1-204ENST00000543140 FOCADQ5VW36 1801 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 ADAMTSL1Q8N6G6 1762 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 CCDC194A0A1B0GVG4 234 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 STXBP3O00186 592 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 CDC25AP30304 524 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 CLEC10AQ8IUN9 316 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 MASTLQ96GX5 879 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 BARHL2Q9NY43 387 aa18.59■□□□□ 0.57
COL4A1-204ENST00000543140 UBASH3AP57075 661 aa18.58■□□□□ 0.57
COL4A1-204ENST00000543140 PCDHA6Q9UN73 950 aa18.58■□□□□ 0.57
COL4A1-204ENST00000543140 PCDHA8Q9Y5H6 950 aa18.58■□□□□ 0.57
COL4A1-204ENST00000543140 NRXN2Q9P2S2 1712 aa18.58■□□□□ 0.56
COL4A1-204ENST00000543140 USP17L5A8MUK1 530 aa18.58■□□□□ 0.56
COL4A1-204ENST00000543140 TOP1P11387 765 aaKnown RBP18.58■□□□□ 0.56
COL4A1-204ENST00000543140 CCZ1BP86790 482 aa18.58■□□□□ 0.56
COL4A1-204ENST00000543140 CCZ1P86791 482 aaPredicted RBP18.58■□□□□ 0.56
COL4A1-204ENST00000543140 INF2Q27J81 1249 aa18.58■□□□□ 0.56
COL4A1-204ENST00000543140 CFAP100Q494V2 611 aa18.58■□□□□ 0.56
COL4A1-204ENST00000543140 NEMFO60524 1076 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 HMGB2P26583 209 aaKnown RBP18.57■□□□□ 0.56
COL4A1-204ENST00000543140 MLKLQ8NB16 471 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 UBA5Q9GZZ9 404 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 OSBPL5Q9H0X9 879 aaPredicted RBP18.57■□□□□ 0.56
COL4A1-204ENST00000543140 M0R2N6 131 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 SLURP2P0DP57 97 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 AKR1B1P15121 316 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 LRRC47Q8N1G4 583 aaKnown RBP18.57■□□□□ 0.56
COL4A1-204ENST00000543140 CCDC148Q8NFR7 591 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 SPATA20Q8TB22 786 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 LZTS2Q9BRK4 669 aa18.57■□□□□ 0.56
COL4A1-204ENST00000543140 FRMPD2Q68DX3 1309 aaPredicted RBP18.57■□□□□ 0.56
COL4A1-204ENST00000543140 USP27XA6NNY8 438 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 GSDMDP57764 484 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 ARMCX5Q6P1M9 558 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 IMPACTQ9P2X3 320 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 NFE2L3Q9Y4A8 694 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 MYH8P13535 1937 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 NAPAP54920 295 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 TPD52L1Q16890 204 aaPredicted RBP18.56■□□□□ 0.56
COL4A1-204ENST00000543140 ZNF772Q68DY9 489 aaPredicted RBP18.56■□□□□ 0.56
COL4A1-204ENST00000543140 CDC42EP5Q6NZY7 148 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 C2CD5Q86YS7 1000 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 C4orf32Q8N8J7 132 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 CCDC34Q96HJ3 373 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 MED15Q96RN5 788 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 SPZ1Q9BXG8 430 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 SUGT1Q9Y2Z0 365 aa18.56■□□□□ 0.56
COL4A1-204ENST00000543140 KLHL10Q6JEL2 608 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 SH3RF1Q7Z6J0 888 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 SMYD4Q8IYR2 804 aaPredicted RBP18.55■□□□□ 0.56
COL4A1-204ENST00000543140 TRIML1Q8N9V2 468 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 FLAD1Q8NFF5 587 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 PIGSQ96S52 555 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 BLZF1Q9H2G9 400 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 MTMR4Q9NYA4 1195 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 PCDHAC2Q9Y5I4 1007 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 TMEM232C9JQI7 657 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 GABPAQ06546 454 aa18.55■□□□□ 0.56
COL4A1-204ENST00000543140 RRP36Q96EU6 259 aaKnown RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms