RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ADAMTS5Q9UNA0 930 aa21.56■■□□□ 1.04
CLSTN3-214ENST00000542663 PHF24Q9UPV7 400 aa21.56■■□□□ 1.04
CLSTN3-214ENST00000542663 GOLIM4O00461 696 aa21.55■■□□□ 1.04
CLSTN3-214ENST00000542663 FCER1AP12319 257 aa21.55■■□□□ 1.04
CLSTN3-214ENST00000542663 TLE2Q04725 743 aa21.55■■□□□ 1.04
CLSTN3-214ENST00000542663 ICA1Q05084 483 aa21.55■■□□□ 1.04
CLSTN3-214ENST00000542663 SLFNL1Q499Z3 407 aa21.55■■□□□ 1.04
CLSTN3-214ENST00000542663 ARMT1Q9H993 441 aa21.55■■□□□ 1.04
CLSTN3-214ENST00000542663 ARHGEF10LQ9HCE6 1279 aa21.55■■□□□ 1.04
CLSTN3-214ENST00000542663 ROBO3Q96MS0 1386 aa21.54■■□□□ 1.04
CLSTN3-214ENST00000542663 WDR46O15213 610 aaKnown RBP21.54■■□□□ 1.04
CLSTN3-214ENST00000542663 PRKAB2O43741 272 aa21.54■■□□□ 1.04
CLSTN3-214ENST00000542663 EPHB4P54760 987 aa21.54■■□□□ 1.04
CLSTN3-214ENST00000542663 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.54■■□□□ 1.04
CLSTN3-214ENST00000542663 DNAJC2Q99543 621 aaKnown RBP21.54■■□□□ 1.04
CLSTN3-214ENST00000542663 XPNPEP3Q9NQH7 507 aa21.54■■□□□ 1.04
CLSTN3-214ENST00000542663 PGK2P07205 417 aa21.53■■□□□ 1.04
CLSTN3-214ENST00000542663 TAL1P17542 331 aaPredicted RBP21.53■■□□□ 1.04
CLSTN3-214ENST00000542663 SAMD1Q6SPF0 538 aaPredicted RBP21.53■■□□□ 1.04
CLSTN3-214ENST00000542663 FBXO28Q9NVF7 368 aa21.53■■□□□ 1.04
CLSTN3-214ENST00000542663 NRBP1Q9UHY1 535 aa21.53■■□□□ 1.04
CLSTN3-214ENST00000542663 GBF1Q92538 1859 aa21.53■■□□□ 1.04
CLSTN3-214ENST00000542663 CYP2D7A0A087X1C5 515 aa21.52■■□□□ 1.04
CLSTN3-214ENST00000542663 SLC25A27O95847 323 aa21.52■■□□□ 1.04
CLSTN3-214ENST00000542663 PGK1P00558 417 aa21.52■■□□□ 1.04
CLSTN3-214ENST00000542663 ZNF792Q3KQV3 632 aa21.52■■□□□ 1.04
CLSTN3-214ENST00000542663 RIOX2Q8IUF8 465 aa21.52■■□□□ 1.04
CLSTN3-214ENST00000542663 TINF2Q9BSI4 451 aa21.52■■□□□ 1.04
CLSTN3-214ENST00000542663 SH2D4AQ9H788 454 aa21.52■■□□□ 1.04
CLSTN3-214ENST00000542663 TACC3Q9Y6A5 838 aa21.52■■□□□ 1.04
CLSTN3-214ENST00000542663 A0A1W2PQ45 241 aaPredicted RBP21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 A0A1W2PQY0 241 aa21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 MBD4O95243 580 aa21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 CLTBP09497 229 aa21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 ZNF865P0CJ78 1059 aaPredicted RBP21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 RARBP10826 455 aa21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 CDK8P49336 464 aa21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 C12orf60Q5U649 245 aa21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 LENG1Q96BZ8 264 aaPredicted RBP21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 MMP19Q99542 508 aa21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 ATP8A2Q9NTI2 1148 aa21.51■■□□□ 1.03
CLSTN3-214ENST00000542663 KIAA0355O15063 1070 aa21.5■■□□□ 1.03
CLSTN3-214ENST00000542663 CHGBP05060 677 aa21.5■■□□□ 1.03
CLSTN3-214ENST00000542663 EEF2P13639 858 aaKnown RBP21.5■■□□□ 1.03
CLSTN3-214ENST00000542663 ADD2P35612 726 aa21.5■■□□□ 1.03
CLSTN3-214ENST00000542663 HSP90AB4PQ58FF6 505 aa21.5■■□□□ 1.03
CLSTN3-214ENST00000542663 REPS2Q8NFH8 660 aa21.5■■□□□ 1.03
CLSTN3-214ENST00000542663 ZNF214Q9UL59 606 aaPredicted RBP21.5■■□□□ 1.03
CLSTN3-214ENST00000542663 DIS3Q9Y2L1 958 aaKnown RBP21.5■■□□□ 1.03
CLSTN3-214ENST00000542663 MUC3AQ02505 3323 aa21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 VWA5AO00534 786 aa21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 ADAMTS4O75173 837 aa21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 C16orf86Q6ZW13 317 aa21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 RNF180Q86T96 592 aa21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 CLASRPQ8N2M8 674 aaKnown RBP21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 PANK1Q8TE04 598 aa21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 RNPC3Q96LT9 517 aaKnown RBP21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 CCDC17Q96LX7 622 aa21.49■■□□□ 1.03
CLSTN3-214ENST00000542663 USP17L12C9JPN9 530 aa21.48■■□□□ 1.03
CLSTN3-214ENST00000542663 USP17L21D6R901 530 aa21.48■■□□□ 1.03
CLSTN3-214ENST00000542663 APBB1O00213 710 aa21.48■■□□□ 1.03
CLSTN3-214ENST00000542663 FOSL2P15408 326 aa21.48■■□□□ 1.03
CLSTN3-214ENST00000542663 KCTD2Q14681 263 aa21.48■■□□□ 1.03
CLSTN3-214ENST00000542663 KIF1BPQ96EK5 621 aa21.48■■□□□ 1.03
CLSTN3-214ENST00000542663 PAG1Q9NWQ8 432 aa21.48■■□□□ 1.03
CLSTN3-214ENST00000542663 PPP1R9AQ9ULJ8 1098 aa21.48■■□□□ 1.03
CLSTN3-214ENST00000542663 TMEM265A0A087WTH1 108 aa21.47■■□□□ 1.03
CLSTN3-214ENST00000542663 PQBP1O60828 265 aaKnown RBP21.47■■□□□ 1.03
CLSTN3-214ENST00000542663 RAG1P15918 1043 aa21.47■■□□□ 1.03
CLSTN3-214ENST00000542663 STAT3P40763 770 aa21.47■■□□□ 1.03
CLSTN3-214ENST00000542663 FAAP100Q0VG06 881 aa21.47■■□□□ 1.03
CLSTN3-214ENST00000542663 ZBED9Q6R2W3 1325 aa21.47■■□□□ 1.03
CLSTN3-214ENST00000542663 IFIT2P09913 472 aaKnown RBP21.46■■□□□ 1.03
CLSTN3-214ENST00000542663 AKR1A1P14550 325 aa21.46■■□□□ 1.03
CLSTN3-214ENST00000542663 FAM83BQ5T0W9 1011 aa21.46■■□□□ 1.03
CLSTN3-214ENST00000542663 ANKRD33Q7Z3H0 272 aa21.46■■□□□ 1.03
CLSTN3-214ENST00000542663 SIRT2Q8IXJ6 389 aa21.46■■□□□ 1.03
CLSTN3-214ENST00000542663 GNL3Q9BVP2 549 aaKnown RBP eCLIP21.46■■□□□ 1.03
CLSTN3-214ENST00000542663 KANSL2Q9H9L4 492 aa21.46■■□□□ 1.03
CLSTN3-214ENST00000542663 SYNRGQ9UMZ2 1314 aa21.46■■□□□ 1.03
CLSTN3-214ENST00000542663 FPGSQ05932 587 aa21.45■■□□□ 1.02
CLSTN3-214ENST00000542663 TSEN34Q9BSV6 310 aaKnown RBP21.45■■□□□ 1.02
CLSTN3-214ENST00000542663 BOLA2Q9H3K6 86 aa21.45■■□□□ 1.02
CLSTN3-214ENST00000542663 GOPCQ9HD26 462 aa21.45■■□□□ 1.02
CLSTN3-214ENST00000542663 TMEM39AQ9NV64 488 aa21.45■■□□□ 1.02
CLSTN3-214ENST00000542663 ACLYP53396 1101 aa21.44■■□□□ 1.02
CLSTN3-214ENST00000542663 GRIN2CQ14957 1233 aa21.44■■□□□ 1.02
CLSTN3-214ENST00000542663 CCSAPQ6IQ19 270 aaPredicted RBP21.44■■□□□ 1.02
CLSTN3-214ENST00000542663 CTR9Q6PD62 1173 aa21.44■■□□□ 1.02
CLSTN3-214ENST00000542663 KLHDC9Q8NEP7 349 aa21.44■■□□□ 1.02
CLSTN3-214ENST00000542663 TOX2Q96NM4 488 aa21.44■■□□□ 1.02
CLSTN3-214ENST00000542663 BCL11AQ9H165 835 aa21.44■■□□□ 1.02
CLSTN3-214ENST00000542663 MYO9BQ13459 2157 aa21.44■■□□□ 1.02
CLSTN3-214ENST00000542663 SNAI1O95863 264 aaPredicted RBP21.43■■□□□ 1.02
CLSTN3-214ENST00000542663 ATP5JP18859 108 aa21.43■■□□□ 1.02
CLSTN3-214ENST00000542663 USP38Q8NB14 1042 aa21.43■■□□□ 1.02
CLSTN3-214ENST00000542663 NUP88Q99567 741 aaPredicted RBP21.43■■□□□ 1.02
CLSTN3-214ENST00000542663 STARD7Q9NQZ5 370 aa21.43■■□□□ 1.02
CLSTN3-214ENST00000542663 CNPY2Q9Y2B0 182 aa21.43■■□□□ 1.02
CLSTN3-214ENST00000542663 RIPK3Q9Y572 518 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms