RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 ZNF512BQ96KM6 892 aaPredicted RBP6.81□□□□□ -1.32
PRKDC-210ENST00000541488 ZCCHC4Q9H5U6 513 aa6.81□□□□□ -1.32
PRKDC-210ENST00000541488 ETV2O00321 342 aaPredicted RBP6.8□□□□□ -1.32
PRKDC-210ENST00000541488 UBOX5O94941 541 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 TRHRP34981 398 aaPredicted RBP6.8□□□□□ -1.32
PRKDC-210ENST00000541488 GDNFP39905 211 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 CLEC16AQ2KHT3 1053 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 TMPRSS7Q7RTY8 843 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 TSPYL5Q86VY4 417 aaPredicted RBP6.8□□□□□ -1.32
PRKDC-210ENST00000541488 NKD1Q969G9 470 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 EAF1Q96JC9 268 aaPredicted RBP6.8□□□□□ -1.32
PRKDC-210ENST00000541488 SPON2Q9BUD6 331 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 IRF2BPLQ9H1B7 796 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 KCNQ5Q9NR82 932 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 PCDHA11Q9Y5I1 949 aa6.8□□□□□ -1.32
PRKDC-210ENST00000541488 BMP7P18075 431 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 GLDCP23378 1020 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 ZNF76P36508 570 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 NFKB2Q00653 900 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 USP48Q86UV5 1035 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 LRRC3Q9BY71 257 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 GPR62Q9BZJ7 368 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 DCP1AQ9NPI6 582 aaPredicted RBP6.79□□□□□ -1.32
PRKDC-210ENST00000541488 GMIPQ9P107 970 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 TMEM59LQ9UK28 342 aa6.79□□□□□ -1.32
PRKDC-210ENST00000541488 RGS13O14921 159 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 SRFP11831 508 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 GAB4Q2WGN9 574 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 KIAA0825Q8IV33 1275 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 ATG4CQ96DT6 458 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 ASPNQ9BXN1 380 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 EPB41L4BQ9H329 900 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 C19orf44Q9H6X5 657 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 ROBO2Q9HCK4 1378 aa6.78□□□□□ -1.32
PRKDC-210ENST00000541488 FANCCQ00597 558 aa6.77□□□□□ -1.33
PRKDC-210ENST00000541488 TRIM26Q12899 539 aaPredicted RBP6.77□□□□□ -1.33
PRKDC-210ENST00000541488 SNW1Q13573 536 aaKnown RBP6.77□□□□□ -1.33
PRKDC-210ENST00000541488 NFIXQ14938 502 aa6.77□□□□□ -1.33
PRKDC-210ENST00000541488 TMC3Q7Z5M5 1100 aa6.77□□□□□ -1.33
PRKDC-210ENST00000541488 PRRT2Q7Z6L0 340 aaPredicted RBP6.77□□□□□ -1.33
PRKDC-210ENST00000541488 ABHD4Q8TB40 342 aa6.77□□□□□ -1.33
PRKDC-210ENST00000541488 MINPP1Q9UNW1 487 aa6.77□□□□□ -1.33
PRKDC-210ENST00000541488 MEIS1O00470 390 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 ATE1O95260 518 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 RAC2P15153 192 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 ZNF165P49910 485 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 SKOR2Q2VWA4 1001 aaPredicted RBP6.76□□□□□ -1.33
PRKDC-210ENST00000541488 FBXW10Q5XX13 1052 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 NLRC3Q7RTR2 1065 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 MYLIPQ8WY64 445 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 VWCEQ96DN2 955 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 ASCC2Q9H1I8 757 aaPredicted RBP6.76□□□□□ -1.33
PRKDC-210ENST00000541488 EHMT1Q9H9B1 1298 aa6.76□□□□□ -1.33
PRKDC-210ENST00000541488 GALK1P51570 392 aa6.75□□□□□ -1.33
PRKDC-210ENST00000541488 NMIQ13287 307 aaPredicted RBP6.75□□□□□ -1.33
PRKDC-210ENST00000541488 CCDC120Q96HB5 630 aa6.75□□□□□ -1.33
PRKDC-210ENST00000541488 NT5C1AQ9BXI3 368 aa6.75□□□□□ -1.33
PRKDC-210ENST00000541488 CNNM2Q9H8M5 875 aa6.75□□□□□ -1.33
PRKDC-210ENST00000541488 CLEC3AO75596 197 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 RECKO95980 971 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 ZGLP1P0C6A0 271 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 RACK1P63244 317 aaKnown RBP6.74□□□□□ -1.33
PRKDC-210ENST00000541488 NBPF12Q5TAG4 269 aaPredicted RBP6.74□□□□□ -1.33
PRKDC-210ENST00000541488 CDCP2Q5VXM1 449 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 TMEM192Q8IY95 271 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 RNF34Q969K3 372 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 SYTL4Q96C24 671 aaPredicted RBP6.74□□□□□ -1.33
PRKDC-210ENST00000541488 SLC6A18Q96N87 628 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 KCNC2Q96PR1 638 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 FOXP3Q9BZS1 431 aa6.74□□□□□ -1.33
PRKDC-210ENST00000541488 MKRN2Q9H000 416 aaKnown RBP6.74□□□□□ -1.33
PRKDC-210ENST00000541488 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.74□□□□□ -1.33
PRKDC-210ENST00000541488 RBM47A0AV96 593 aaKnown RBP6.73□□□□□ -1.33
PRKDC-210ENST00000541488 FKTNO75072 461 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 NME1P15531 152 aaKnown RBP6.73□□□□□ -1.33
PRKDC-210ENST00000541488 RPL10P27635 214 aaKnown RBP6.73□□□□□ -1.33
PRKDC-210ENST00000541488 RNF4P78317 190 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 TIGD5Q53EQ6 642 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 C9orf131Q5VYM1 1079 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 ZPBP2Q6X784 338 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 SLITRK4Q8IW52 837 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 FERD3LQ96RJ6 166 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 HDAC8Q9BY41 377 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 RNF32Q9H0A6 362 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 FAM86C1Q9NVL1 165 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 RTEL1Q9NZ71 1219 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 EBF1Q9UH73 591 aa6.73□□□□□ -1.33
PRKDC-210ENST00000541488 SSU72P8A0A1W2PR75 194 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 HPXP02790 462 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 TEKQ02763 1124 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 NBPF9Q3BBW0 867 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 SIRT2Q8IXJ6 389 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 REXO1Q8N1G1 1221 aaKnown RBP6.72□□□□□ -1.33
PRKDC-210ENST00000541488 KCNN1Q92952 543 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 TCTN2Q96GX1 697 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 SLC9A7Q96T83 725 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 PRDM14Q9GZV8 571 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 FBXL21Q9UKT6 434 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 PPT2Q9UMR5 302 aa6.72□□□□□ -1.33
PRKDC-210ENST00000541488 PRAMEF1O95521 474 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms