RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 ATL3Q6DD88 541 aa10.57□□□□□ -0.72
CLIP1-214ENST00000540539 CWC25Q9NXE8 425 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-214ENST00000540539 ABCC6O95255 1503 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 FAM83GA6ND36 823 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 ZMYND10O75800 440 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 ADAMTS2O95450 1211 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 FAM107AO95990 144 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 MCM3P25205 808 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 ALDH3A1P30838 453 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 TUBP50607 506 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 MTF1Q14872 753 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 MSL1Q68DK7 614 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 NCAPH2Q6IBW4 605 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 HIBCHQ6NVY1 386 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 CCDC73Q6ZRK6 1079 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 SAPCD2Q86UD0 394 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 SH2D3CQ8N5H7 860 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 MAIP1Q8WWC4 291 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 DHRS1Q96LJ7 313 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 ZSCAN31Q96LW9 406 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 NACA2Q9H009 215 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 BZW2Q9Y6E2 419 aaKnown RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 TMEM221A6NGB7 291 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 PPP1R37O75864 691 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 DNAJC8O75937 253 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 NPTXRO95502 500 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 DESP17661 470 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 CNGA1P29973 690 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 CFAP100Q494V2 611 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 SPTY2D1Q68D10 685 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 LARP1Q6PKG0 1096 aaKnown RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 UNC5CLQ8IV45 518 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 RPAP2Q8IXW5 612 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 ENGASEQ8NFI3 743 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 ZCRB1Q8TBF4 217 aaKnown RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 CCHCR1Q8TD31 782 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 AGAP11Q8TF27 550 aa10.56□□□□□ -0.72
CLIP1-214ENST00000540539 RNPC3Q96LT9 517 aaKnown RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 UTP6Q9NYH9 597 aaKnown RBP10.56□□□□□ -0.72
CLIP1-214ENST00000540539 SALL3Q9BXA9 1300 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 LRRD1A4D1F6 860 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 STXBP3O00186 592 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 CCDC175P0C221 793 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 EPB41P11171 864 aaKnown RBP10.55□□□□□ -0.72
CLIP1-214ENST00000540539 DYNC1I2Q13409 638 aaKnown RBP10.55□□□□□ -0.72
CLIP1-214ENST00000540539 MTX1Q13505 466 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 BTG3Q14201 252 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-214ENST00000540539 SMCR8Q8TEV9 937 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-214ENST00000540539 ANKRD24Q8TF21 1146 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 CYFIP2Q96F07 1278 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 LMO7Q8WWI1 1683 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 RGPD1P0DJD0 1748 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 ATP2C2O75185 946 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 VIL1P09327 827 aaKnown RBP10.55□□□□□ -0.72
CLIP1-214ENST00000540539 VCAM1P19320 739 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 FAM160A1Q05DH4 1040 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 KRT24Q2M2I5 525 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 KBTBD12Q3ZCT8 623 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 CCDC38Q502W7 563 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 LACTB2Q53H82 288 aaPredicted RBP10.55□□□□□ -0.72
CLIP1-214ENST00000540539 C16orf87Q6PH81 154 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 SLC35F6Q8N357 371 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 TC2NQ8N9U0 490 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 SMYD1Q8NB12 490 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 CORO1BQ9BR76 489 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.55□□□□□ -0.72
CLIP1-214ENST00000540539 CAMTA1Q9Y6Y1 1673 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 RGPD2P0DJD1 1756 aa10.55□□□□□ -0.72
CLIP1-214ENST00000540539 SPATA31A6Q5VVP1 1343 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 COL14A1Q05707 1796 aaKnown RBP10.54□□□□□ -0.72
CLIP1-214ENST00000540539 VAMP4O75379 141 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 SERPINC1P01008 464 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 HMOX1P09601 288 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 FUT4P22083 530 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 ADAM9Q13443 819 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 RIPK1Q13546 671 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 CUL4BQ13620 913 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 CCDC80Q76M96 950 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 EYA1Q99502 592 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 TUBGCP4Q9UGJ1 667 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 IPO5O00410 1097 aaKnown RBP10.54□□□□□ -0.72
CLIP1-214ENST00000540539 IKBKBO14920 756 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 CBFA2T2O43439 604 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 ADKP55263 362 aaKnown RBP10.54□□□□□ -0.72
CLIP1-214ENST00000540539 TBX2Q13207 712 aaPredicted RBP10.54□□□□□ -0.72
CLIP1-214ENST00000540539 PPP1R7Q15435 360 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 PKN1Q16512 942 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 KDM7AQ6ZMT4 941 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 OGFOD1Q8N543 542 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 PDILTQ8N807 584 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 CNBD1Q8NA66 436 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 FBXO41Q8TF61 875 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 TEKT1Q969V4 418 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 UBA5Q9GZZ9 404 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 INCENPQ9NQS7 918 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 INTS13Q9NVM9 706 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 WDR37Q9Y2I8 494 aa10.54□□□□□ -0.72
CLIP1-214ENST00000540539 UBN2Q6ZU65 1347 aa10.53□□□□□ -0.72
CLIP1-214ENST00000540539 SH3TC1Q8TE82 1336 aa10.53□□□□□ -0.72
CLIP1-214ENST00000540539 TARSL2A2RTX5 802 aaKnown RBP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms