RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 KCTD1Q719H9 257 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 SGMS1Q86VZ5 419 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 TMEM87BQ96K49 555 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 TBC1D32Q96NH3 1257 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 MYL10Q9BUA6 226 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 CPVLQ9H3G5 476 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 SH2D4AQ9H788 454 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 GOPCQ9HD26 462 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 TXNRD2Q9NNW7 524 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 TMOD4Q9NZQ9 345 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 ADAMTS5Q9UNA0 930 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 SMCHD1A6NHR9 2005 aa15.25■□□□□ 0.03
CCDC42-202ENST00000539522 FRMPD2Q68DX3 1309 aaPredicted RBP15.24■□□□□ 0.03
CCDC42-202ENST00000539522 SPDYE16A6NNV3 312 aaPredicted RBP15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L15C9J2P7 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L13C9JLJ4 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L11C9JVI0 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L18D6R9N7 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L22D6RA61 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L17D6RBQ6 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L19D6RCP7 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L20D6RJB6 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 CA12O43570 354 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 CTGFP29279 349 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 ANP32AP39687 249 aaKnown RBP15.24■□□□□ 0.03
CCDC42-202ENST00000539522 USP17L24Q0WX57 530 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 IFIT1BQ5T764 474 aaKnown RBP15.24■□□□□ 0.03
CCDC42-202ENST00000539522 C17orf99Q6UX52 265 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 Q6ZUG5 572 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 RAB11FIP4Q86YS3 637 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 STAG2Q8N3U4 1231 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 REPS2Q8NFH8 660 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 RBPJLQ9UBG7 517 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 MTMR7Q9Y216 660 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 MGAMO43451 1857 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 HTTP42858 3142 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 PLXNB2O15031 1838 aa15.24■□□□□ 0.03
CCDC42-202ENST00000539522 FOXN1O15353 648 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 GOLGA8HP0CJ92 632 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 BCRP11274 1271 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 BMP3P12645 472 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 HERVK_113P62684 666 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 MAP2K1Q02750 393 aaPredicted RBP15.23■□□□□ 0.03
CCDC42-202ENST00000539522 ZNF543Q08ER8 600 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 TAF1CQ15572 869 aaPredicted RBP15.23■□□□□ 0.03
CCDC42-202ENST00000539522 CCDC178Q5BJE1 867 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 NBPF11Q86T75 865 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 ATG4CQ96DT6 458 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 LARP6Q9BRS8 491 aaKnown RBP15.23■□□□□ 0.03
CCDC42-202ENST00000539522 KAT14Q9H8E8 782 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 FAM217BQ9NTX9 383 aaPredicted RBP15.23■□□□□ 0.03
CCDC42-202ENST00000539522 SAGE1Q9NXZ1 904 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 BTBD7Q9P203 1132 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 MAD2L2Q9UI95 211 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 HPS5Q9UPZ3 1129 aa15.23■□□□□ 0.03
CCDC42-202ENST00000539522 PALM3A6NDB9 673 aaPredicted RBP15.22■□□□□ 0.03
CCDC42-202ENST00000539522 RAD21O60216 631 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 TLR2O60603 784 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 HMGB1P09429 215 aaKnown RBP15.22■□□□□ 0.03
CCDC42-202ENST00000539522 HSPA1AP0DMV8 641 aaKnown RBP15.22■□□□□ 0.03
CCDC42-202ENST00000539522 HSPA1BP0DMV9 641 aaKnown RBP15.22■□□□□ 0.03
CCDC42-202ENST00000539522 RXRAP19793 462 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 DSG3P32926 999 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 EVCP57679 992 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 APOBRQ0VD83 1088 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 Q3C1V9 767 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 BTNL9Q6UXG8 535 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 LBX2Q6XYB7 198 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 ZNF654Q8IZM8 581 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 DCAF4Q8WV16 495 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 TANGO6Q9C0B7 1094 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 CPA4Q9UI42 421 aa15.22■□□□□ 0.03
CCDC42-202ENST00000539522 TMEM232C9JQI7 657 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 HSPA8P11142 646 aaKnown RBP15.21■□□□□ 0.03
CCDC42-202ENST00000539522 TAL1P17542 331 aaPredicted RBP15.21■□□□□ 0.03
CCDC42-202ENST00000539522 PSMA5P28066 241 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 SLC16A2P36021 539 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 SLC1A4P43007 532 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 GRM4Q14833 912 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 PPP4R3BQ5MIZ7 849 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 APOA5Q6Q788 366 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 BRF1Q92994 677 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 ALDH8A1Q9H2A2 487 aaPredicted RBP15.21■□□□□ 0.03
CCDC42-202ENST00000539522 GPCPD1Q9NPB8 672 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 PPP1R9AQ9ULJ8 1098 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 CYP46A1Q9Y6A2 500 aa15.21■□□□□ 0.03
CCDC42-202ENST00000539522 NID2Q14112 1375 aa15.21■□□□□ 0.02
CCDC42-202ENST00000539522 ZNF536O15090 1300 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 CYTH3O43739 400 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 PLA2G6O60733 806 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 FLOT1O75955 427 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 CD2BP2O95400 341 aaKnown RBP15.2■□□□□ 0.02
CCDC42-202ENST00000539522 LARGE1O95461 756 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 ALDH1A1P00352 501 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 AK2P54819 239 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 SNAP25P60880 206 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 COG2Q14746 738 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 PARK7Q99497 189 aaKnown RBP15.2■□□□□ 0.02
CCDC42-202ENST00000539522 UBA5Q9GZZ9 404 aa15.2■□□□□ 0.02
CCDC42-202ENST00000539522 PRR12Q9ULL5 1215 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms