RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 ATP2B1P20020 1258 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 GNA11P29992 359 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 PRPHP41219 470 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 NOVP48745 357 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 CDK8P49336 464 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 SARSP49591 514 aaKnown RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 UBASH3AP57075 661 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 RHBDL3P58872 404 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 FKBP1AP62942 108 aaKnown RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 PTGDRQ13258 359 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 NPY5RQ15761 445 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 TPD52L1Q16890 204 aaPredicted RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 CCDC144BQ3MJ40 725 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 ASPRV1Q53RT3 343 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 ZNF772Q68DY9 489 aaPredicted RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 PPP1R18Q6NYC8 613 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 PIK3AP1Q6ZUJ8 805 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 SH3RF1Q7Z6J0 888 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 FILIP1Q7Z7B0 1213 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 FCHSD1Q86WN1 690 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 MPNDQ8N594 471 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 CACTINQ8WUQ7 758 aaKnown RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 SYMPKQ92797 1274 aaKnown RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 ERCC4Q92889 916 aaPredicted RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 FBXW7Q969H0 707 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 DHX58Q96C10 678 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 RRP36Q96EU6 259 aaKnown RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 CTAGE1Q96RT6 745 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 ZC3H12CQ9C0D7 883 aaKnown RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 IL17RBQ9NRM6 502 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 BARHL2Q9NY43 387 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.54□□□□□ -1.2
USP28-206ENST00000538224 NRBP1Q9UHY1 535 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 MAD2L2Q9UI95 211 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 STX8Q9UNK0 236 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 JAG2Q9Y219 1238 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 PARP3Q9Y6F1 533 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 ADAMTSL1Q8N6G6 1762 aa7.54□□□□□ -1.2
USP28-206ENST00000538224 SYNRGQ9UMZ2 1314 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 PSDA5PKW4 1024 aaPredicted RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 VWA3AA6NCI4 1184 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 G3V3G9 751 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 SMIM22K7EJ46 135 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 GTPBP6O43824 516 aaPredicted RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 SRGNP10124 158 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 LMOD1P29536 600 aaPredicted RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 HOXA7P31268 230 aaPredicted RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 CCZ1BP86790 482 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 CCZ1P86791 482 aaPredicted RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 SPAG1Q07617 926 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 LRMPQ12912 555 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 CFAP100Q494V2 611 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 DCAF8Q5TAQ9 597 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 SOGA3Q5TF21 947 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 HHIPL2Q6UWX4 724 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 DPP8Q6V1X1 898 aaPredicted RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 TMC6Q7Z403 805 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 HEATR3Q7Z4Q2 680 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 ANKRD20A12PQ8NF67 263 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 CCDC47Q96A33 483 aaKnown RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 SHISA4Q96DD7 197 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 DYNLL2Q96FJ2 89 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 MASTLQ96GX5 879 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 AK8Q96MA6 479 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 TMEM47Q9BQJ4 181 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 CUEDC2Q9H467 287 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 C6orf50Q9HD87 102 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 POLLQ9UGP5 575 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 SAP30BPQ9UHR5 308 aaKnown RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 DAGLAQ9Y4D2 1042 aa7.53□□□□□ -1.2
USP28-206ENST00000538224 COL2A1P02458 1487 aaPredicted RBP7.53□□□□□ -1.2
USP28-206ENST00000538224 SIPA1L1O43166 1804 aa7.52□□□□□ -1.2
USP28-206ENST00000538224 BAZ2BQ9UIF8 2168 aaKnown RBP7.52□□□□□ -1.21
USP28-206ENST00000538224 USP17L3A6NCW0 530 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 USP17L4A6NCW7 530 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 GOLGA6L9A6NEM1 432 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 KLRF2D3W0D1 207 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 M0R2N6 131 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 STXBP3O00186 592 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 TNNT1P13805 278 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 ZNF18P17022 549 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 CDK11BP21127 795 aaKnown RBP7.52□□□□□ -1.21
USP28-206ENST00000538224 PPP1R2P41236 205 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 NAPAP54920 295 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 GTF2IP78347 998 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 HDLBPQ00341 1268 aaKnown RBP7.52□□□□□ -1.21
USP28-206ENST00000538224 SYCP1Q15431 976 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 ZNF174Q15697 407 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 FILIP1LQ4L180 1135 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 SPECC1Q5M775 1068 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 SPATA1Q5VX52 437 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 WWC2Q6AWC2 1192 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 DTHD1Q6ZMT9 781 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 USP17L1Q7RTZ2 530 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 VSTM4Q8IW00 320 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 PDILTQ8N807 584 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 TEKT1Q969V4 418 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 AKT1S1Q96B36 256 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 PAGE5Q96GU1 130 aa7.52□□□□□ -1.21
USP28-206ENST00000538224 NAP1L4Q99733 375 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms