RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 RUFY3Q7L099 469 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 DPF3Q92784 378 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 RNF208Q9H0X6 261 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 STAP2Q9UGK3 403 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 MRVI1Q9Y6F6 885 aa8.31□□□□□ -1.08
MSH6-209ENST00000538136 PRPF40AO75400 957 aaKnown RBP8.3□□□□□ -1.08
MSH6-209ENST00000538136 C6orf222P0C671 652 aaPredicted RBP8.3□□□□□ -1.08
MSH6-209ENST00000538136 HSP90AA4PQ58FG1 418 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 SCYL3Q8IZE3 742 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 SH3TC2Q8TF17 1288 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 PSTPIP2Q9H939 334 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 K7ELQ4 463 aaPredicted RBP8.3□□□□□ -1.08
MSH6-209ENST00000538136 CCNA1P78396 465 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 CDC37Q16543 378 aaPredicted RBP8.3□□□□□ -1.08
MSH6-209ENST00000538136 GJC2Q5T442 439 aaPredicted RBP8.3□□□□□ -1.08
MSH6-209ENST00000538136 ZNF384Q8TF68 577 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 LSG1Q9H089 658 aaKnown RBP8.3□□□□□ -1.08
MSH6-209ENST00000538136 SPDYE4A6NLX3 237 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 MYBP10242 640 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 RPS6KB1P23443 525 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 PDE4DQ08499 809 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 CAMK4Q16566 473 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 INF2Q27J81 1249 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 TREML2Q5T2D2 321 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 CD99L2Q8TCZ2 262 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 TBC1D5Q92609 795 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 RAD50Q92878 1312 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 FAM212AQ96EL1 285 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 TMEM106CQ9BVX2 250 aa8.3□□□□□ -1.08
MSH6-209ENST00000538136 NOGQ13253 232 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 MAP4K1Q92918 833 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 DSCC1Q9BVC3 393 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.29□□□□□ -1.082e-6■■■■■ 30.1
MSH6-209ENST00000538136 DYNC1LI2O43237 492 aaPredicted RBP8.29□□□□□ -1.08
MSH6-209ENST00000538136 CETPP11597 493 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 BAATQ14032 418 aaPredicted RBP8.29□□□□□ -1.08
MSH6-209ENST00000538136 COG2Q14746 738 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 ME3Q16798 604 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 TRERF1Q96PN7 1200 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 TCHPQ9BT92 498 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 FAM49AQ9H0Q0 323 aaPredicted RBP8.29□□□□□ -1.08
MSH6-209ENST00000538136 HERC5Q9UII4 1024 aaKnown RBP8.29□□□□□ -1.08
MSH6-209ENST00000538136 TPCN1Q9ULQ1 816 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 SHPRHQ149N8 1683 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 FAM205AQ6ZU69 1335 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 CCNT1O60563 726 aaKnown RBP8.29□□□□□ -1.08
MSH6-209ENST00000538136 ENTPD3O75355 529 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 USP2O75604 605 aaPredicted RBP8.29□□□□□ -1.08
MSH6-209ENST00000538136 LARGE1O95461 756 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 APLP1P51693 650 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 USP14P54578 494 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 SOX10P56693 466 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 NR5A1Q13285 461 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 SLC9C1Q4G0N8 1177 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 SYDE2Q5VT97 1194 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 KLHL10Q6JEL2 608 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.29□□□□□ -1.08
MSH6-209ENST00000538136 SH3BP5LQ7L8J4 393 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 TMTC2Q8N394 836 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 EEF2KMTQ96G04 330 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 TBC1D2Q9BYX2 928 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 PNMA3Q9UL41 463 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 BTAF1O14981 1849 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 ZNF609O15014 1411 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 A0A1W2PRG0 241 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 BTBD18B2RXH4 712 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 BIN1O00499 593 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 TFRCP02786 760 aaKnown RBP8.29□□□□□ -1.08
MSH6-209ENST00000538136 PTPRAP18433 802 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 VCAM1P19320 739 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 TMEM87AQ8NBN3 555 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 CCDC102AQ96A19 550 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 SLF1Q9BQI6 1058 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 MTMR4Q9NYA4 1195 aa8.29□□□□□ -1.08
MSH6-209ENST00000538136 LRRC37A3O60309 1634 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 CD2BP2O95400 341 aaKnown RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 BACE1P56817 501 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 TPD52L1Q16890 204 aaPredicted RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 APOA5Q6Q788 366 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 FASTKD5Q7L8L6 764 aaKnown RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 FAM43AQ8N2R8 423 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 RMDN3Q96TC7 470 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 MMRN2Q9H8L6 949 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 C6orf50Q9HD87 102 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 HOXC10Q9NYD6 342 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 SWAP70Q9UH65 585 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 R3HCC1Q9Y3T6 440 aaKnown RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 URB1O60287 2271 aaKnown RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 TTC28Q96AY4 2481 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 GNAQP50148 359 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 MRPL12P52815 198 aaKnown RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 NCAPH2Q6IBW4 605 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 DIS3L2Q8IYB7 885 aaKnown RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 ERCC4Q92889 916 aaPredicted RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 ASCC2Q9H1I8 757 aaPredicted RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 TMEM260Q9NX78 707 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 BTBD19C9JJ37 291 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 CTNND1O60716 968 aaKnown RBP8.28□□□□□ -1.08
MSH6-209ENST00000538136 AFMP43652 599 aa8.28□□□□□ -1.08
MSH6-209ENST00000538136 QRICH1Q2TAL8 776 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms