RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 KLHDC9Q8NEP7 349 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 PHOX2BQ99453 314 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 MMP19Q99542 508 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 CABP5Q9NP86 173 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 SYNRGQ9UMZ2 1314 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 CACNA1AO00555 2505 aa11.32□□□□□ -0.6
USP28-205ENST00000537706 MYH2Q9UKX2 1941 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 POTEB3A0JP26 581 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 SLC25A27O95847 323 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 NBPF7P0C2Y1 421 aaPredicted RBP11.31□□□□□ -0.6
USP28-205ENST00000537706 KCTD2Q14681 263 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 CCDC102BQ68D86 513 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 POTEBQ6S5H4 581 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 PHOSPHO2Q8TCD6 241 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 RAI14Q9P0K7 980 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 DUSP11O75319 330 aaKnown RBP11.31□□□□□ -0.6
USP28-205ENST00000537706 ASGR1P07306 291 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 C6orf222P0C671 652 aaPredicted RBP11.31□□□□□ -0.6
USP28-205ENST00000537706 KCNA5P22460 613 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 CCL23P55773 120 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 JAG1P78504 1218 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 RAB3GAP1Q15042 981 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 METTL16Q86W50 562 aaKnown RBP11.31□□□□□ -0.6
USP28-205ENST00000537706 SUGP1Q8IWZ8 645 aaKnown RBP11.31□□□□□ -0.6
USP28-205ENST00000537706 MSL3Q8N5Y2 521 aaKnown RBP11.31□□□□□ -0.6
USP28-205ENST00000537706 TANGO6Q9C0B7 1094 aa11.31□□□□□ -0.6
USP28-205ENST00000537706 LAMA2P24043 3122 aaKnown RBP11.3□□□□□ -0.6
USP28-205ENST00000537706 ZNF865P0CJ78 1059 aaPredicted RBP11.3□□□□□ -0.6
USP28-205ENST00000537706 RASGRF1Q13972 1273 aa11.3□□□□□ -0.6
USP28-205ENST00000537706 PRSS33Q8NF86 280 aa11.3□□□□□ -0.6
USP28-205ENST00000537706 PRKAG3Q9UGI9 489 aa11.3□□□□□ -0.6
USP28-205ENST00000537706 MYO9BQ13459 2157 aa11.3□□□□□ -0.6
USP28-205ENST00000537706 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.29□□□□□ -0.6
USP28-205ENST00000537706 EPOPA6NHQ4 379 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 CIAO1O76071 339 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 CD4P01730 458 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 IL9P15248 144 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 COPB2P35606 906 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 TAP1Q03518 808 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.29□□□□□ -0.6
USP28-205ENST00000537706 ZHX1Q9UKY1 873 aaPredicted RBP11.29□□□□□ -0.6
USP28-205ENST00000537706 GRXCR2A6NFK2 248 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 CABYRO75952 493 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 TAL1P17542 331 aaPredicted RBP11.29□□□□□ -0.6
USP28-205ENST00000537706 CCDC27Q2M243 656 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 CCSAPQ6IQ19 270 aaPredicted RBP11.29□□□□□ -0.6
USP28-205ENST00000537706 MAPKAPK5Q8IW41 473 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 SH3RF3Q8TEJ3 882 aaPredicted RBP11.29□□□□□ -0.6
USP28-205ENST00000537706 TGFBRAP1Q8WUH2 860 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 LENG1Q96BZ8 264 aaPredicted RBP11.29□□□□□ -0.6
USP28-205ENST00000537706 DNAJC18Q9H819 358 aa11.29□□□□□ -0.6
USP28-205ENST00000537706 A0A0G2JMZ2 1700 aa11.28□□□□□ -0.6
USP28-205ENST00000537706 IL16Q14005 1332 aa11.28□□□□□ -0.6
USP28-205ENST00000537706 VAMP4O75379 141 aa11.28□□□□□ -0.6
USP28-205ENST00000537706 MVPQ14764 893 aaKnown RBP11.28□□□□□ -0.6
USP28-205ENST00000537706 GNASQ5JWF2 1037 aa11.28□□□□□ -0.6
USP28-205ENST00000537706 NSUN4Q96CB9 384 aaKnown RBP11.28□□□□□ -0.6
USP28-205ENST00000537706 SIL1Q9H173 461 aa11.28□□□□□ -0.6
USP28-205ENST00000537706 ZEB2O60315 1214 aa11.27□□□□□ -0.6
USP28-205ENST00000537706 IL15P40933 162 aaPredicted RBP11.27□□□□□ -0.6
USP28-205ENST00000537706 ABCB5Q2M3G0 1257 aa11.27□□□□□ -0.6
USP28-205ENST00000537706 SHROOM1Q2M3G4 852 aaPredicted RBP11.27□□□□□ -0.6
USP28-205ENST00000537706 ATOH1Q92858 354 aaPredicted RBP11.27□□□□□ -0.6
USP28-205ENST00000537706 CDCA7LQ96GN5 454 aa11.27□□□□□ -0.6
USP28-205ENST00000537706 NOC4LQ9BVI4 516 aaKnown RBP11.27□□□□□ -0.6
USP28-205ENST00000537706 LRP2BPQ9P2M1 347 aa11.27□□□□□ -0.6
USP28-205ENST00000537706 ID4P47928 161 aa11.27□□□□□ -0.61
USP28-205ENST00000537706 ZNF792Q3KQV3 632 aa11.27□□□□□ -0.61
USP28-205ENST00000537706 CERKLQ49MI3 558 aaPredicted RBP11.27□□□□□ -0.61
USP28-205ENST00000537706 ATG9AQ7Z3C6 839 aa11.27□□□□□ -0.61
USP28-205ENST00000537706 POP1Q99575 1024 aaKnown RBP11.27□□□□□ -0.61
USP28-205ENST00000537706 PALD1Q9ULE6 856 aa11.27□□□□□ -0.61
USP28-205ENST00000537706 FLT1P17948 1338 aa11.26□□□□□ -0.61
USP28-205ENST00000537706 PGK2P07205 417 aa11.26□□□□□ -0.61
USP28-205ENST00000537706 DSG3P32926 999 aa11.26□□□□□ -0.61
USP28-205ENST00000537706 GJA9P57773 515 aa11.26□□□□□ -0.61
USP28-205ENST00000537706 BMP8AQ7Z5Y6 402 aa11.26□□□□□ -0.61
USP28-205ENST00000537706 HERC6Q8IVU3 1022 aa11.26□□□□□ -0.61
USP28-205ENST00000537706 UPF3AQ9H1J1 476 aaKnown RBP11.26□□□□□ -0.61
USP28-205ENST00000537706 AKAP2Q9Y2D5 859 aa11.26□□□□□ -0.61
USP28-205ENST00000537706 MYADML2A6NDP7 307 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 FLOT1O75955 427 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 ADORA1P30542 326 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 RFC2P35250 354 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 TTLL4Q14679 1199 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 GORABQ5T7V8 394 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 NAA16Q6N069 864 aaPredicted RBP11.25□□□□□ -0.61
USP28-205ENST00000537706 ADHFE1Q8IWW8 467 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 ACER1Q8TDN7 264 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 GDPD5Q8WTR4 605 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 ZBED2Q9BTP6 218 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 AATFQ9NY61 560 aaKnown RBP eCLIP11.25□□□□□ -0.61
USP28-205ENST00000537706 SAP30BPQ9UHR5 308 aaKnown RBP11.25□□□□□ -0.61
USP28-205ENST00000537706 CTNNA3Q9UI47 895 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 UMODL1Q5DID0 1318 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 SUPT20HL2P0C7V6 817 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 KCNJ6P48051 423 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 RFX5P48382 616 aaPredicted RBP11.25□□□□□ -0.61
USP28-205ENST00000537706 ITGA7Q13683 1181 aa11.25□□□□□ -0.61
USP28-205ENST00000537706 DEFB128Q7Z7B8 93 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms