RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 E2F4Q16254 413 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 FBXO38Q6PIJ6 1188 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 TOGARAM2Q6ZUX3 1019 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 BLIDQ8IZY5 108 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 WDR66Q8TBY9 1149 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 SH3RF3Q8TEJ3 882 aaPredicted RBP14.92□□□□□ -0.02
LDLR-203ENST00000535915 XDHP47989 1333 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 IRS2Q9Y4H2 1338 aa14.92□□□□□ -0.02
LDLR-203ENST00000535915 GOLGA6L9A6NEM1 432 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 VPS72Q15906 364 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 IL17AQ16552 155 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 SLC51AQ86UW1 340 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 DGKHQ86XP1 1220 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 AMOTL1Q8IY63 956 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 STAG2Q8N3U4 1231 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 DDX41Q9UJV9 622 aaKnown RBP14.91□□□□□ -0.02
LDLR-203ENST00000535915 AKR1B15C9JRZ8 316 aaPredicted RBP14.91□□□□□ -0.02
LDLR-203ENST00000535915 DIXDC1Q155Q3 683 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 CDKAL1Q5VV42 579 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 APTXQ7Z2E3 356 aaKnown RBP14.91□□□□□ -0.02
LDLR-203ENST00000535915 CTAGE1Q96RT6 745 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 PYM1Q9BRP8 204 aaKnown RBP14.91□□□□□ -0.02
LDLR-203ENST00000535915 MKRN1Q9UHC7 482 aaKnown RBP14.91□□□□□ -0.02
LDLR-203ENST00000535915 CTNND2Q9UQB3 1225 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 MTMR7Q9Y216 660 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 CDK5RAP2Q96SN8 1893 aa14.91□□□□□ -0.02
LDLR-203ENST00000535915 TSPY3P0CV98 308 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 TSPY8P0CW00 308 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 FILIP1LQ4L180 1135 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 FAM182BQ5T319 152 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 PDXDC2PQ6P474 469 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 PPFIBP1Q86W92 1011 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 PCDHA4Q9UN74 947 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 MYH1P12882 1939 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 USP17L3A6NCW0 530 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 USP17L4A6NCW7 530 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 FANCGO15287 622 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 BAG3O95817 575 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 RFC4P35249 363 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 RRAGBQ5VZM2 374 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 USP17L1Q7RTZ2 530 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 IGSF22Q8N9C0 903 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 RASGRP4Q8TDF6 673 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 CPLX3Q8WVH0 158 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 ADD3Q9UEY8 706 aaKnown RBP14.9□□□□□ -0.02
LDLR-203ENST00000535915 FAM205AQ6ZU69 1335 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 COBLO75128 1261 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 TXLNAP40222 546 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 GNG11P61952 73 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 ARL6IP4Q66PJ3 421 aaKnown RBP14.9□□□□□ -0.02
LDLR-203ENST00000535915 ZNF444Q8N0Y2 327 aaPredicted RBP14.9□□□□□ -0.02
LDLR-203ENST00000535915 MNS1Q8NEH6 495 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 TGFBRAP1Q8WUH2 860 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 DESI2Q9BSY9 194 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 SH3GLB2Q9NR46 395 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 LEMD3Q9Y2U8 911 aa14.9□□□□□ -0.02
LDLR-203ENST00000535915 NHSQ6T4R5 1651 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 GTPBP6O43824 516 aaPredicted RBP14.89□□□□□ -0.03
LDLR-203ENST00000535915 CDC25AP30304 524 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 LONP1P36776 959 aaKnown RBP14.89□□□□□ -0.03
LDLR-203ENST00000535915 GSTO1P78417 241 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 RBL2Q08999 1139 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 GRAPQ13588 217 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 GRM4Q14833 912 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 NFIXQ14938 502 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 GRAPLQ8TC17 118 aaPredicted RBP14.89□□□□□ -0.03
LDLR-203ENST00000535915 MAD2L2Q9UI95 211 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 CCDC194A0A1B0GVG4 234 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 CASQ1P31415 396 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 GNAQP50148 359 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 GRIK5Q16478 980 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 ZNF804AQ7Z570 1209 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 PANX2Q96RD6 677 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 MTRQ99707 1265 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 SRRTQ9BXP5 876 aaKnown RBP14.89□□□□□ -0.03
LDLR-203ENST00000535915 STX8Q9UNK0 236 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 PARP3Q9Y6F1 533 aa14.89□□□□□ -0.03
LDLR-203ENST00000535915 MTF1Q14872 753 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 CCDC178Q5BJE1 867 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 SLC44A5Q8NCS7 719 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 ANKS1AQ92625 1134 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 GPR101Q96P66 508 aaPredicted RBP14.88□□□□□ -0.03
LDLR-203ENST00000535915 SAP30BPQ9UHR5 308 aaKnown RBP14.88□□□□□ -0.03
LDLR-203ENST00000535915 ROBO3Q96MS0 1386 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 SOWAHDA6NJG2 315 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 STAT6P42226 847 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 NT5C2P49902 561 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 ARHGAP29Q52LW3 1261 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 TYW1BQ6NUM6 668 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 HEATR3Q7Z4Q2 680 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 MAPKAPK5Q8IW41 473 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 C4orf32Q8N8J7 132 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 UBXN4Q92575 508 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 WDR24Q96S15 920 aa14.88□□□□□ -0.03
LDLR-203ENST00000535915 CCT6AP40227 531 aaKnown RBP14.87□□□□□ -0.03
LDLR-203ENST00000535915 PBX1P40424 430 aa14.87□□□□□ -0.03
LDLR-203ENST00000535915 KARSQ15046 597 aaKnown RBP14.87□□□□□ -0.03
LDLR-203ENST00000535915 TRAPPC3LQ5T215 181 aa14.87□□□□□ -0.03
LDLR-203ENST00000535915 RASSF8Q8NHQ8 419 aa14.87□□□□□ -0.03
LDLR-203ENST00000535915 CARD6Q9BX69 1037 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms