RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 GGT7Q9UJ14 662 aa6.52□□□□□ -1.37
CD44-235ENST00000532339 KIF21BO75037 1637 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 GREM1O60565 184 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 DNAJA2O60884 412 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 LRRN2O75325 713 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 LTKP29376 864 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 GBP1P32455 592 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 HK2P52789 917 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 EGR3Q06889 387 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 ABHD4Q8TB40 342 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 PCDHB14Q9Y5E9 798 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 PLB1Q6P1J6 1458 aa6.51□□□□□ -1.37
CD44-235ENST00000532339 DBX1A6NMT0 343 aa6.5□□□□□ -1.37
CD44-235ENST00000532339 RGS13O14921 159 aa6.5□□□□□ -1.37
CD44-235ENST00000532339 ZNF296Q8WUU4 475 aaPredicted RBP6.5□□□□□ -1.37
CD44-235ENST00000532339 MYLIPQ8WY64 445 aa6.5□□□□□ -1.37
CD44-235ENST00000532339 SYTL4Q96C24 671 aaPredicted RBP6.5□□□□□ -1.37
CD44-235ENST00000532339 PPP1R16BQ96T49 567 aa6.5□□□□□ -1.37
CD44-235ENST00000532339 ADAMTS10Q9H324 1103 aa6.5□□□□□ -1.37
CD44-235ENST00000532339 BRMS1Q9HCU9 246 aa6.5□□□□□ -1.37
CD44-235ENST00000532339 GMIPQ9P107 970 aa6.5□□□□□ -1.37
CD44-235ENST00000532339 RBM47A0AV96 593 aaKnown RBP6.49□□□□□ -1.37
CD44-235ENST00000532339 SLC22A31A6NKX4 558 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 ATE1O95260 518 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 HPXP02790 462 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 RAG1P15918 1043 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 RNF4P78317 190 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 CLEC16AQ2KHT3 1053 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 ARSHQ5FYA8 562 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 PRR23BQ6ZRT6 265 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 DHX38Q92620 1227 aaKnown RBP6.49□□□□□ -1.37
CD44-235ENST00000532339 ASCC2Q9H1I8 757 aaPredicted RBP6.49□□□□□ -1.37
CD44-235ENST00000532339 PCDHA11Q9Y5I1 949 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 PBRM1Q86U86 1689 aa6.49□□□□□ -1.37
CD44-235ENST00000532339 PDZD8Q8NEN9 1154 aa6.48□□□□□ -1.37
CD44-235ENST00000532339 ENOX1Q8TC92 643 aaKnown RBP6.48□□□□□ -1.37
CD44-235ENST00000532339 VWCEQ96DN2 955 aa6.48□□□□□ -1.37
CD44-235ENST00000532339 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.48□□□□□ -1.37
CD44-235ENST00000532339 EHMT1Q9H9B1 1298 aa6.48□□□□□ -1.37
CD44-235ENST00000532339 ADAMTS1Q9UHI8 967 aa6.48□□□□□ -1.37
CD44-235ENST00000532339 KIAA0586Q9BVV6 1533 aa6.48□□□□□ -1.37
CD44-235ENST00000532339 ASXL2Q76L83 1435 aa6.48□□□□□ -1.37
CD44-235ENST00000532339 YEATS2Q9ULM3 1422 aa6.48□□□□□ -1.37
CD44-235ENST00000532339 FGD5Q6ZNL6 1462 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 UBOX5O94941 541 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 ZGLP1P0C6A0 271 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 CRKP46108 304 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 ERVFC1P60507 584 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 RAD51AP2Q09MP3 1159 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 APOBRQ0VD83 1088 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 TMCO4Q5TGY1 634 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 REXO1Q8N1G1 1221 aaKnown RBP6.47□□□□□ -1.37
CD44-235ENST00000532339 OXR1Q8N573 874 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 TMEM87AQ8NBN3 555 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 FBXO15Q8NCQ5 510 aaPredicted RBP6.47□□□□□ -1.37
CD44-235ENST00000532339 DIRC2Q96SL1 478 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 NSUN3Q9H649 340 aaKnown RBP6.47□□□□□ -1.37
CD44-235ENST00000532339 MAP3K4Q9Y6R4 1608 aa6.47□□□□□ -1.37
CD44-235ENST00000532339 SHISA3A0PJX4 238 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 FITM1A5D6W6 292 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 RAP1GAPP47736 663 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 ZNF165P49910 485 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 DUSP4Q13115 394 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 NMIQ13287 307 aaPredicted RBP6.46□□□□□ -1.38
CD44-235ENST00000532339 SEZ6Q53EL9 994 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 CDCP2Q5VXM1 449 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 OVOS1Q6IE37 1185 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 SYDE1Q6ZW31 735 aaPredicted RBP6.46□□□□□ -1.38
CD44-235ENST00000532339 LILRA2Q8N149 483 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 UBP1Q9NZI7 540 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 LTBP4Q8N2S1 1624 aa6.46□□□□□ -1.38
CD44-235ENST00000532339 PTPRTO14522 1441 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 TSPAN15O95858 294 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 ZNF16P17020 682 aaPredicted RBP6.45□□□□□ -1.38
CD44-235ENST00000532339 MCM4P33991 863 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 CCNFP41002 786 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 LRRFIP1Q32MZ4 808 aaKnown RBP6.45□□□□□ -1.38
CD44-235ENST00000532339 GK5Q6ZS86 529 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 SPPL2CQ8IUH8 684 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 SYTL5Q8TDW5 730 aaPredicted RBP6.45□□□□□ -1.38
CD44-235ENST00000532339 NKD1Q969G9 470 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 NT5C1AQ9BXI3 368 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 EPB41L4BQ9H329 900 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 CNNM2Q9H8M5 875 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 MADDQ8WXG6 1647 aa6.45□□□□□ -1.38
CD44-235ENST00000532339 TOP2AP11388 1531 aaKnown RBP6.45□□□□□ -1.38
CD44-235ENST00000532339 TRHRP34981 398 aaPredicted RBP6.44□□□□□ -1.38
CD44-235ENST00000532339 TEKQ02763 1124 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 CHRNEQ04844 493 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 CLCQ05315 142 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 NR0B2Q15466 257 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 NBPF12Q5TAG4 269 aaPredicted RBP6.44□□□□□ -1.38
CD44-235ENST00000532339 NLRC3Q7RTR2 1065 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 KIAA0825Q8IV33 1275 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 ATG4CQ96DT6 458 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 HDAC8Q9BY41 377 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 RNF32Q9H0A6 362 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 SP110Q9HB58 689 aa6.44□□□□□ -1.38
CD44-235ENST00000532339 DCP1AQ9NPI6 582 aaPredicted RBP6.44□□□□□ -1.38
CD44-235ENST00000532339 EPRSP07814 1512 aaKnown RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms