RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 SEC63Q9UGP8 760 aaKnown RBP16.87■□□□□ 0.29
ECHDC1-220ENST00000528402 LAD1O00515 517 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 AP5Z1O43299 807 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 ATP2B1P20020 1258 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 SCNN1DP51172 638 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 ORC2Q13416 577 aaPredicted RBP16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 LONRF3Q496Y0 759 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 NT5DC1Q5TFE4 455 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 DHX40Q8IX18 779 aaKnown RBP16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 ZMYND12Q9H0C1 365 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 CSRNP2Q9H175 543 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 RIOX1Q9H6W3 641 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 C6orf50Q9HD87 102 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 DDX4Q9NQI0 724 aaKnown RBP16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 PI4KBQ9UBF8 816 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 DACH1Q9UI36 760 aa16.86■□□□□ 0.29
ECHDC1-220ENST00000528402 BAZ2BQ9UIF8 2168 aaKnown RBP16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 CCDC194A0A1B0GVG4 234 aa16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 ESYT2A0FGR8 921 aa16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 M0R2N6 131 aa16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 SNHG28P0DPA3 235 aa16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 MDM2Q00987 491 aaPredicted RBP16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 SOGA3Q5TF21 947 aa16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 PIK3AP1Q6ZUJ8 805 aa16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 TTLL6Q8N841 843 aa16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 PSMD1Q99460 953 aa16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.85■□□□□ 0.29
ECHDC1-220ENST00000528402 STXBP3O00186 592 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 POLR2DO15514 142 aaKnown RBP16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 CYTH3O43739 400 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 SMC2O95347 1197 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 CHRNA5P30532 468 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 PTGDRQ13258 359 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 ZNF174Q15697 407 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 CCDC93Q567U6 631 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 EARS2Q5JPH6 523 aaKnown RBP16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 GPATCH4Q5T3I0 446 aaKnown RBP16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 WWC2Q6AWC2 1192 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 KRT25Q7Z3Z0 450 aa16.84■□□□□ 0.29
ECHDC1-220ENST00000528402 ENTPD3O75355 529 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 PDHBP11177 359 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 LONP1P36776 959 aaKnown RBP16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 POSTNQ15063 836 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 HEATR3Q7Z4Q2 680 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 METTL16Q86W50 562 aaKnown RBP16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 DRC7Q8IY82 874 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 MLKLQ8NB16 471 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 MXD3Q9BW11 206 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 PCDHA6Q9UN73 950 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 PCDHA8Q9Y5H6 950 aa16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 COL2A1P02458 1487 aaPredicted RBP16.83■□□□□ 0.28
ECHDC1-220ENST00000528402 PSME4Q14997 1843 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 NEMFO60524 1076 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 SLFN14P0C7P3 912 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 AKR1B1P15121 316 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 SHMT1P34896 483 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 SARSP49591 514 aaKnown RBP16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 RBM5P52756 815 aaKnown RBP eCLIP16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 DPCR1Q3MIW9 517 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 PPP1R18Q6NYC8 613 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 KIAA0825Q8IV33 1275 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 AOPEPQ8N6M6 819 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 SMARCE1Q969G3 411 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 MKL1Q969V6 931 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 TRIM34Q9BYJ4 488 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 PCDHA5Q9Y5H7 936 aa16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 GREB1LQ9C091 1923 aaPredicted RBP16.82■□□□□ 0.28
ECHDC1-220ENST00000528402 ZNF646O15015 1829 aaPredicted RBP16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 FAM205CA6NFA0 338 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 PPIP5K2O43314 1243 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 TXLNAP40222 546 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 PRPHP41219 470 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 NAPAP54920 295 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 SEMA3FQ13275 785 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 PNOCQ13519 176 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 AOC3Q16853 763 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 USP17L2Q6R6M4 530 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 IQUBQ8NA54 791 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 SPATA20Q8TB22 786 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 GPKOWQ92917 476 aaPredicted RBP eCLIP16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 GLT8D2Q9H1C3 349 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 KANSL2Q9H9L4 492 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 NYAP2Q9P242 653 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 CLIP2Q9UDT6 1046 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 SERTAD1Q9UHV2 236 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 SYNPO2Q9UMS6 1093 aa16.81■□□□□ 0.28
ECHDC1-220ENST00000528402 SMCO2A6NFE2 343 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 USP17L5A8MUK1 530 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 ACTN4O43707 911 aaKnown RBP16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 OFD1O75665 1012 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 MMP14P50281 582 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 GRIN1Q05586 938 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 SLC35G1Q2M3R5 365 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 PIBF1Q8WXW3 757 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 IMPACTQ9P2X3 320 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 HDAC9Q9UKV0 1011 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 SCN9AQ15858 1988 aa16.8■□□□□ 0.28
ECHDC1-220ENST00000528402 GOLGA8HP0CJ92 632 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms