RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PGK2P07205 417 aa17.27■□□□□ 0.36
CPSF1-201ENST00000526271 ADCYAP1R1P41586 468 aa17.27■□□□□ 0.36
CPSF1-201ENST00000526271 TTF1Q15361 905 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-201ENST00000526271 BADQ92934 168 aa17.27■□□□□ 0.36
CPSF1-201ENST00000526271 KIF1BPQ96EK5 621 aa17.27■□□□□ 0.36
CPSF1-201ENST00000526271 TTYH1Q9H313 450 aaPredicted RBP17.27■□□□□ 0.36
CPSF1-201ENST00000526271 BOLA2Q9H3K6 86 aa17.27■□□□□ 0.36
CPSF1-201ENST00000526271 CHD9Q3L8U1 2897 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 USP17L12C9JPN9 530 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 USP17L21D6R901 530 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 FLOT1O75955 427 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 EEF2P13639 858 aaKnown RBP17.26■□□□□ 0.35
CPSF1-201ENST00000526271 ICA1Q05084 483 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 C16orf86Q6ZW13 317 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 FERMT2Q96AC1 680 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 PUS7LQ9H0K6 701 aaKnown RBP17.26■□□□□ 0.35
CPSF1-201ENST00000526271 PAG1Q9NWQ8 432 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 ZNF214Q9UL59 606 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-201ENST00000526271 MUC3AQ02505 3323 aa17.26■□□□□ 0.35
CPSF1-201ENST00000526271 ZNF865P0CJ78 1059 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-201ENST00000526271 ATP5JP18859 108 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 IRX5P78411 483 aaPredicted RBP17.25■□□□□ 0.35
CPSF1-201ENST00000526271 PLS1Q14651 629 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 ZNF792Q3KQV3 632 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 NCAPG2Q86XI2 1143 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 ABRAQ8N0Z2 381 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 MB21D1Q8N884 522 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 HAUS7Q99871 368 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 MROH8Q9H579 483 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 SWAP70Q9UH65 585 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 COG6Q9Y2V7 657 aa17.25■□□□□ 0.35
CPSF1-201ENST00000526271 MYH4Q9Y623 1939 aa17.24■□□□□ 0.35
CPSF1-201ENST00000526271 WDR46O15213 610 aaKnown RBP17.24■□□□□ 0.35
CPSF1-201ENST00000526271 C1orf53Q5VUE5 145 aa17.24■□□□□ 0.35
CPSF1-201ENST00000526271 CTR9Q6PD62 1173 aa17.24■□□□□ 0.35
CPSF1-201ENST00000526271 CLASRPQ8N2M8 674 aaKnown RBP17.24■□□□□ 0.35
CPSF1-201ENST00000526271 ATP8A2Q9NTI2 1148 aa17.24■□□□□ 0.35
CPSF1-201ENST00000526271 PHF24Q9UPV7 400 aa17.24■□□□□ 0.35
CPSF1-201ENST00000526271 RIPK3Q9Y572 518 aa17.24■□□□□ 0.35
CPSF1-201ENST00000526271 PGK1P00558 417 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 TLE2Q04725 743 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 HSP90AB4PQ58FF6 505 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 SAMD1Q6SPF0 538 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-201ENST00000526271 RIOX2Q8IUF8 465 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 RPAP2Q8IXW5 612 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-201ENST00000526271 ARRDC4Q8NCT1 418 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 FGD4Q96M96 766 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 NUP88Q99567 741 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-201ENST00000526271 CDX2Q99626 313 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-201ENST00000526271 LBHD1Q9BQE6 289 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-201ENST00000526271 BCL11AQ9H165 835 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 PPP1R9AQ9ULJ8 1098 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 ROBO3Q96MS0 1386 aa17.23■□□□□ 0.35
CPSF1-201ENST00000526271 VWA5AO00534 786 aa17.22■□□□□ 0.35
CPSF1-201ENST00000526271 ADCY6O43306 1168 aa17.22■□□□□ 0.35
CPSF1-201ENST00000526271 SMARCA5O60264 1052 aaPredicted RBP17.22■□□□□ 0.35
CPSF1-201ENST00000526271 ADAMTS4O75173 837 aa17.22■□□□□ 0.35
CPSF1-201ENST00000526271 IFIT2P09913 472 aaKnown RBP17.22■□□□□ 0.35
CPSF1-201ENST00000526271 FAM83BQ5T0W9 1011 aa17.22■□□□□ 0.35
CPSF1-201ENST00000526271 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.22■□□□□ 0.35
CPSF1-201ENST00000526271 SEMA6BQ9H3T3 888 aa17.22■□□□□ 0.35
CPSF1-201ENST00000526271 PRDM5Q9NQX1 630 aaPredicted RBP17.22■□□□□ 0.35
CPSF1-201ENST00000526271 MYADML2A6NDP7 307 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 KBTBD13C9JR72 458 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 SNAI1O95863 264 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-201ENST00000526271 MYCNP04198 464 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-201ENST00000526271 FCER1AP12319 257 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 RASA1P20936 1047 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 UBE3CQ15386 1083 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 C20orf194Q5TEA3 1177 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 CCSAPQ6IQ19 270 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-201ENST00000526271 CCDC17Q96LX7 622 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 TINF2Q9BSI4 451 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 ARHGEF10LQ9HCE6 1279 aa17.21■□□□□ 0.35
CPSF1-201ENST00000526271 MMP19Q99542 508 aa17.2■□□□□ 0.34
CPSF1-201ENST00000526271 EPB41L4AQ9HCS5 686 aaPredicted RBP17.2■□□□□ 0.34
CPSF1-201ENST00000526271 SLC4A4Q9Y6R1 1079 aa17.2■□□□□ 0.34
CPSF1-201ENST00000526271 LCTP09848 1927 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 CHD7Q9P2D1 2997 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 DNAJC25-GNG10A0A024R161 153 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 IGKV6D-41A0A0C4DH26 115 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 A0A1W2PQ45 241 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-201ENST00000526271 A0A1W2PQY0 241 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 GSG1L2A8MUP6 293 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 SLC25A27O95847 323 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 STAT3P40763 770 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 MYLIPQ8WY64 445 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 STRBPQ96SI9 672 aaKnown RBP17.19■□□□□ 0.34
CPSF1-201ENST00000526271 XPNPEP3Q9NQH7 507 aa17.19■□□□□ 0.34
CPSF1-201ENST00000526271 DIS3Q9Y2L1 958 aaKnown RBP17.19■□□□□ 0.34
CPSF1-201ENST00000526271 KIAA0355O15063 1070 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 RAB11FIP3O75154 756 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 ZNF697Q5TEC3 545 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 TSHZ3Q63HK5 1081 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 KLHDC9Q8NEP7 349 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 OSBP2Q969R2 916 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 KANSL2Q9H9L4 492 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 NRBP1Q9UHY1 535 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 LRRC37A2A6NM11 1700 aa17.18■□□□□ 0.34
CPSF1-201ENST00000526271 REV3LO60673 3130 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms