RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ARHGEF10LQ9HCE6 1279 aa12.07□□□□□ -0.48
VPS28-204ENST00000526054 ARPP21Q9UBL0 812 aaPredicted RBP12.07□□□□□ -0.48
VPS28-204ENST00000526054 COL11A1P12107 1806 aaPredicted RBP12.07□□□□□ -0.48
VPS28-204ENST00000526054 MSCO60682 206 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 APPP05067 770 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 HOXC6P09630 235 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 CNGA1P29973 690 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 TDO2P48775 406 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 ICA1Q05084 483 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 COG2Q14746 738 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 BMP2KLQ5H9B9 411 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 CCDC129Q6ZRS4 1044 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 SKAP1Q86WV1 359 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 RUFY2Q8WXA3 655 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 LPAR1Q92633 364 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 DYNLL2Q96FJ2 89 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 SH2D4AQ9H788 454 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 DDX20Q9UHI6 824 aaKnown RBP12.06□□□□□ -0.48
VPS28-204ENST00000526054 CCDC171Q6TFL3 1326 aa12.06□□□□□ -0.48
VPS28-204ENST00000526054 GSG1L2A8MUP6 293 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 PATL2C9JE40 543 aaKnown RBP12.05□□□□□ -0.48
VPS28-204ENST00000526054 FLOT1O75955 427 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 AKR1B1P15121 316 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 ADORA2AP29274 412 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 CYP2C19P33261 490 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 PLS1Q14651 629 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 LRRC26Q2I0M4 334 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 CWC27Q6UX04 472 aaKnown RBP12.05□□□□□ -0.48
VPS28-204ENST00000526054 DPP9Q86TI2 863 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 SPICE1Q8N0Z3 855 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 MB21D1Q8N884 522 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 NPLOC4Q8TAT6 608 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 MOV10L1Q9BXT6 1211 aaKnown RBP12.05□□□□□ -0.48
VPS28-204ENST00000526054 SPATC1LQ9H0A9 340 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 NAPBQ9H115 298 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 HOXC10Q9NYD6 342 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 RAD50Q92878 1312 aa12.05□□□□□ -0.48
VPS28-204ENST00000526054 GREB1LQ9C091 1923 aaPredicted RBP12.04□□□□□ -0.48
VPS28-204ENST00000526054 CYP2D7A0A087X1C5 515 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 USP17L12C9JPN9 530 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 USP17L21D6R901 530 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 CYBAP13498 195 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 ERCC3P19447 782 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 KIAA1755Q5JYT7 1200 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 IFNL3Q8IZI9 196 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 TDHQ8IZJ6 230 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 SHCBP1Q8NEM2 672 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 CCDC17Q96LX7 622 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 UBE2OQ9C0C9 1292 aaKnown RBP12.04□□□□□ -0.48
VPS28-204ENST00000526054 VCPKMTQ9H867 229 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 EPB41L4AQ9HCS5 686 aaPredicted RBP12.04□□□□□ -0.48
VPS28-204ENST00000526054 TMX2Q9Y320 296 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 LTBP2Q14767 1821 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 A0A0C4DFX4 3053 aa12.04□□□□□ -0.48
VPS28-204ENST00000526054 LAMA4Q16363 1823 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 DNM1LO00429 736 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 WDR46O15213 610 aaKnown RBP12.03□□□□□ -0.48
VPS28-204ENST00000526054 STRNO43815 780 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 CHMLP26374 656 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 DSG3P32926 999 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 CDK8P49336 464 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 SBK1Q52WX2 424 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 C12orf60Q5U649 245 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 OLFML2BQ68BL8 750 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 CTR9Q6PD62 1173 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 SAMD1Q6SPF0 538 aaPredicted RBP12.03□□□□□ -0.48
VPS28-204ENST00000526054 C16orf86Q6ZW13 317 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 ZNF589Q86UQ0 364 aaPredicted RBP12.03□□□□□ -0.48
VPS28-204ENST00000526054 NCAPG2Q86XI2 1143 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 ATG4CQ96DT6 458 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 SENP6Q9GZR1 1112 aaPredicted RBP12.03□□□□□ -0.48
VPS28-204ENST00000526054 MROH8Q9H579 483 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 SLC5A4Q9NY91 659 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 PLXNA1Q9UIW2 1896 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 ROBO3Q96MS0 1386 aa12.03□□□□□ -0.48
VPS28-204ENST00000526054 MINDY4BA8MYZ0 360 aa12.02□□□□□ -0.49
VPS28-204ENST00000526054 SMIM22K7EJ46 135 aa12.02□□□□□ -0.49
VPS28-204ENST00000526054 SLC3A2P08195 630 aaKnown RBP12.02□□□□□ -0.49
VPS28-204ENST00000526054 MDM2Q00987 491 aaPredicted RBP12.02□□□□□ -0.49
VPS28-204ENST00000526054 LRIT3Q3SXY7 679 aa12.02□□□□□ -0.49
VPS28-204ENST00000526054 VPS53Q5VIR6 699 aa12.02□□□□□ -0.49
VPS28-204ENST00000526054 GPR153Q6NV75 609 aa12.02□□□□□ -0.49
VPS28-204ENST00000526054 CASC1Q6TDU7 716 aa12.02□□□□□ -0.49
VPS28-204ENST00000526054 TRPV1Q8NER1 839 aa12.02□□□□□ -0.49
VPS28-204ENST00000526054 ZMYM6O95789 1325 aa12.02□□□□□ -0.49
VPS28-204ENST00000526054 LAMA2P24043 3122 aaKnown RBP12.02□□□□□ -0.49
VPS28-204ENST00000526054 ZNFX1Q9P2E3 1918 aaKnown RBP12.01□□□□□ -0.49
VPS28-204ENST00000526054 DNAH12Q6ZR08 3092 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 RAD21O60216 631 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 IGHA2P01877 340 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 HSPD1P10809 573 aaKnown RBP12.01□□□□□ -0.49
VPS28-204ENST00000526054 EEF2P13639 858 aaKnown RBP12.01□□□□□ -0.49
VPS28-204ENST00000526054 ATN1P54259 1190 aaPredicted RBP12.01□□□□□ -0.49
VPS28-204ENST00000526054 ALX1Q15699 326 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 SIAH1Q8IUQ4 282 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 ABRAQ8N0Z2 381 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 KANSL2Q9H9L4 492 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 ZNF287Q9HBT7 754 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 GOPCQ9HD26 462 aa12.01□□□□□ -0.49
VPS28-204ENST00000526054 MYH4Q9Y623 1939 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms