RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 NBPF12Q5TAG4 269 aaPredicted RBP6.09□□□□□ -1.43
CD44-219ENST00000525685 MPZL3Q6UWV2 235 aa6.09□□□□□ -1.43
CD44-219ENST00000525685 NLRC3Q7RTR2 1065 aa6.09□□□□□ -1.43
CD44-219ENST00000525685 MYLIPQ8WY64 445 aa6.09□□□□□ -1.43
CD44-219ENST00000525685 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.09□□□□□ -1.43
CD44-219ENST00000525685 MYO15BQ96JP2 1530 aa6.09□□□□□ -1.44
CD44-219ENST00000525685 MEIS3P2A8K0S8 358 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 ZNF165P49910 485 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 CHMP4BP1P59074 171 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 ZC3H6P61129 1189 aaKnown RBP6.08□□□□□ -1.44
CD44-219ENST00000525685 NMIQ13287 307 aaPredicted RBP6.08□□□□□ -1.44
CD44-219ENST00000525685 CLEC16AQ2KHT3 1053 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 FBXW10Q5XX13 1052 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 PDZD8Q8NEN9 1154 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 BHLHE22Q8NFJ8 381 aaPredicted RBP6.08□□□□□ -1.44
CD44-219ENST00000525685 ENOX1Q8TC92 643 aaKnown RBP6.08□□□□□ -1.44
CD44-219ENST00000525685 SYTL5Q8TDW5 730 aaPredicted RBP6.08□□□□□ -1.44
CD44-219ENST00000525685 GPRASP2Q96D09 838 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 SLC38A3Q99624 504 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 HDAC8Q9BY41 377 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 ANTXR1Q9H6X2 564 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 ZNF281Q9Y2X9 895 aa6.08□□□□□ -1.44
CD44-219ENST00000525685 NME1P15531 152 aaKnown RBP6.07□□□□□ -1.44
CD44-219ENST00000525685 TRHRP34981 398 aaPredicted RBP6.07□□□□□ -1.44
CD44-219ENST00000525685 CCNFP41002 786 aa6.07□□□□□ -1.44
CD44-219ENST00000525685 RAD51AP2Q09MP3 1159 aa6.07□□□□□ -1.44
CD44-219ENST00000525685 PKN1Q16512 942 aa6.07□□□□□ -1.44
CD44-219ENST00000525685 LRRFIP1Q32MZ4 808 aaKnown RBP6.07□□□□□ -1.44
CD44-219ENST00000525685 NBPF9Q3BBW0 867 aa6.07□□□□□ -1.44
CD44-219ENST00000525685 CPLX3Q8WVH0 158 aa6.07□□□□□ -1.44
CD44-219ENST00000525685 DHX38Q92620 1227 aaKnown RBP6.07□□□□□ -1.44
CD44-219ENST00000525685 ASCC2Q9H1I8 757 aaPredicted RBP6.07□□□□□ -1.44
CD44-219ENST00000525685 IGSF5Q9NSI5 407 aa6.07□□□□□ -1.44
CD44-219ENST00000525685 EBF1Q9UH73 591 aa6.07□□□□□ -1.44
CD44-219ENST00000525685 DCAF1Q9Y4B6 1507 aa6.07□□□□□ -1.44
CD44-219ENST00000525685 DBX1A6NMT0 343 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 TNFRSF10CO14798 259 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 SNW1Q13573 536 aaKnown RBP6.06□□□□□ -1.44
CD44-219ENST00000525685 NR0B2Q15466 257 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 NAALADL2Q58DX5 795 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 TMC3Q7Z5M5 1100 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 DAGLBQ8NCG7 672 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 SPATA32Q96LK8 384 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 DIRC2Q96SL1 478 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 RNF32Q9H0A6 362 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 C19orf44Q9H6X5 657 aa6.06□□□□□ -1.44
CD44-219ENST00000525685 PPP1R1BQ9UD71 204 aaPredicted RBP6.06□□□□□ -1.44
CD44-219ENST00000525685 FITM1A5D6W6 292 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 CLEC3AO75596 197 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 DNAJA1P31689 397 aaKnown RBP6.05□□□□□ -1.44
CD44-219ENST00000525685 TIGD5Q53EQ6 642 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 TMEM192Q8IY95 271 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 LILRA2Q8N149 483 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 OXR1Q8N573 874 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 USHBP1Q8N6Y0 703 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 ZNF512BQ96KM6 892 aaPredicted RBP6.05□□□□□ -1.44
CD44-219ENST00000525685 FERD3LQ96RJ6 166 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 CRBNQ96SW2 442 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 G6PC3Q9BUM1 346 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 NSUN3Q9H649 340 aaKnown RBP6.05□□□□□ -1.44
CD44-219ENST00000525685 EFR3BQ9Y2G0 817 aa6.05□□□□□ -1.44
CD44-219ENST00000525685 TSPAN15O95858 294 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 ARID5AQ03989 594 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 DUSP4Q13115 394 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 RNF111Q6ZNA4 994 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 SYDE1Q6ZW31 735 aaPredicted RBP6.04□□□□□ -1.44
CD44-219ENST00000525685 CILP2Q8IUL8 1156 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 ZNF655Q8N720 491 aaPredicted RBP6.04□□□□□ -1.44
CD44-219ENST00000525685 FBXO15Q8NCQ5 510 aaPredicted RBP6.04□□□□□ -1.44
CD44-219ENST00000525685 LINC01599Q8WXQ3 324 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 SYTL4Q96C24 671 aaPredicted RBP6.04□□□□□ -1.44
CD44-219ENST00000525685 TCTN2Q96GX1 697 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 PPP1R16BQ96T49 567 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 SLC9A7Q96T83 725 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 PRDM14Q9GZV8 571 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 ZNRF3Q9ULT6 936 aa6.04□□□□□ -1.44
CD44-219ENST00000525685 SIGLEC6O43699 453 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 KRT1P04264 644 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 SSBP05455 408 aaKnown RBP eCLIP6.03□□□□□ -1.44
CD44-219ENST00000525685 CHRNEQ04844 493 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 SPPL2CQ8IUH8 684 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 ANKS4BQ8N8V4 417 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 LINC00116Q8NCU8 138 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 SLC6A18Q96N87 628 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.03□□□□□ -1.44
CD44-219ENST00000525685 FOXP3Q9BZS1 431 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 EPB41L4BQ9H329 900 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 KCNK12Q9HB15 430 aa6.03□□□□□ -1.44
CD44-219ENST00000525685 DCP1AQ9NPI6 582 aaPredicted RBP6.03□□□□□ -1.44
CD44-219ENST00000525685 KRTAP4-8A0A0G2JLE6 195 aa6.02□□□□□ -1.45
CD44-219ENST00000525685 TMEM82A0PJX8 343 aa6.02□□□□□ -1.45
CD44-219ENST00000525685 PRAMEF1O95521 474 aa6.02□□□□□ -1.45
CD44-219ENST00000525685 ACRP10323 421 aa6.02□□□□□ -1.45
CD44-219ENST00000525685 IMPDH2P12268 514 aa6.02□□□□□ -1.45
CD44-219ENST00000525685 NASPP49321 788 aaPredicted RBP6.02□□□□□ -1.45
CD44-219ENST00000525685 COL9A2Q14055 689 aaPredicted RBP6.02□□□□□ -1.45
CD44-219ENST00000525685 INTS3Q68E01 1043 aaKnown RBP6.02□□□□□ -1.45
CD44-219ENST00000525685 GINM1Q9NU53 330 aa6.02□□□□□ -1.45
CD44-219ENST00000525685 TCFL5Q9UL49 500 aa6.02□□□□□ -1.45
CD44-219ENST00000525685 NOTOA8MTQ0 251 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms