RNA–Protein interactions for RNA: ENST00000521646.1

CSMD1-210, Transcript of CUB and Sushi multiple domains 1, human

TSL 5

Gene CSMD1, Length 1,003 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-210	ENST00000521646	GPR108	Q9NPR9	543 aa		13.58	□□□□□ -0.24
CSMD1-210	ENST00000521646	BMP8B	P34820	402 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	ZYX	Q15942	572 aa	Known RBP	13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	SLFNL1	Q499Z3	407 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	KIAA1755	Q5JYT7	1200 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	TTC39A	Q5SRH9	613 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	TATDN1	Q6P1N9	297 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	GPR142	Q7Z601	462 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	TRPV1	Q8NER1	839 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	C11orf49	Q9H6J7	331 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	HMX1	Q9NP08	348 aa	Predicted RBP	13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	BTBD7	Q9P203	1132 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	HDAC5	Q9UQL6	1122 aa		13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646	NOP58	Q9Y2X3	529 aa	Known RBP	13.57	□□□□□ -0.24
CSMD1-210	ENST00000521646		A0A1W2PPC1	479 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	USP17L10	C9JJH3	530 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	SURF6	O75683	361 aa	Known RBP	13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	CHGB	P05060	677 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	ASNS	P08243	561 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	CYP7A1	P22680	504 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	PLCD1	P51178	756 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	IRX3	P78415	501 aa	Predicted RBP	13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	ANKLE1	Q8NAG6	615 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	GPRC5A	Q8NFJ5	357 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	PAGR1	Q9BTK6	254 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	TBC1D2	Q9BYX2	928 aa		13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646	DHX36	Q9H2U1	1008 aa	Known RBP	13.56	□□□□□ -0.24
CSMD1-210	ENST00000521646		A0A1W2PRG0	241 aa		13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	XRCC5	P13010	732 aa	Known RBP	13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	SHMT1	P34896	483 aa		13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	RDH13	Q8NBN7	331 aa		13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	NPLOC4	Q8TAT6	608 aa		13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	C12orf42	Q96LP6	360 aa		13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	PHOX2B	Q99453	314 aa		13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	RIOK1	Q9BRS2	568 aa	Known RBP	13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	AS3MT	Q9HBK9	375 aa		13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646		A0A0G2JMZ2	1700 aa		13.55	□□□□□ -0.24
CSMD1-210	ENST00000521646	DDX11L8	A8MPP1	907 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	C19orf81	C9J6K1	198 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	ACTN4	O43707	911 aa	Known RBP	13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	VCAM1	P19320	739 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	MAP2K5	Q13163	448 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	BLOC1S3	Q6QNY0	202 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	CLEC10A	Q8IUN9	316 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	MAGEB6	Q8N7X4	407 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	NUDT12	Q9BQG2	462 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	TMOD4	Q9NZQ9	345 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	LTBP2	Q14767	1821 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	NAV1	Q8NEY1	1877 aa		13.54	□□□□□ -0.24
CSMD1-210	ENST00000521646	CCER2	I3L3R5	266 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	IDH1	O75874	414 aa	Known RBP	13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	BAG3	O95817	575 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	CYP2D6	P10635	497 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	GABPA	Q06546	454 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	ZKSCAN2	Q63HK3	967 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	CEP85	Q6P2H3	762 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	CATSPERG	Q6ZRH7	1159 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	PLEKHH3	Q7Z736	793 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	SLC44A5	Q8NCS7	719 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	EDC3	Q96F86	508 aa	Known RBP	13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	EXOC6B	Q9Y2D4	811 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	PARP14	Q460N5	1801 aa		13.53	□□□□□ -0.24
CSMD1-210	ENST00000521646	IPO8	O15397	1037 aa	Known RBP	13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	ZKSCAN1	P17029	563 aa	Predicted RBP	13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	MDM2	Q00987	491 aa	Predicted RBP	13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	LRIT3	Q3SXY7	679 aa		13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	CCDC158	Q5M9N0	1113 aa		13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	USP17L2	Q6R6M4	530 aa		13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	SIAH1	Q8IUQ4	282 aa		13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	DEFB123	Q8N688	67 aa		13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	SLC17A8	Q8NDX2	589 aa		13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	SOCS4	Q8WXH5	440 aa		13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	APBA2	Q99767	749 aa		13.52	□□□□□ -0.25
CSMD1-210	ENST00000521646	DLL1	O00548	723 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	MAPK4	P31152	587 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	CYP2C19	P33261	490 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	OS9	Q13438	667 aa	Predicted RBP	13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	SEPT2	Q15019	361 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	PPP1R18	Q6NYC8	613 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	TDH	Q8IZJ6	230 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	KIAA1683	Q9H0B3	1180 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	EHD4	Q9H223	541 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	MTMR10	Q9NXD2	777 aa		13.51	□□□□□ -0.25
CSMD1-210	ENST00000521646	MUC3A	Q02505	3323 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	TCRBV5S4A2T	A0A5A2	114 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	RGS2	P41220	211 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	GRB14	Q14449	540 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	RAB3GAP1	Q15042	981 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	SIRT2	Q8IXJ6	389 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	PANK1	Q8TE04	598 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	NOL10	Q9BSC4	688 aa	Known RBP	13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	RPAP3	Q9H6T3	665 aa	Predicted RBP	13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	IL1RAPL2	Q9NP60	686 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	SERPINB13	Q9UIV8	391 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	RABGAP1	Q9Y3P9	1069 aa		13.5	□□□□□ -0.25
CSMD1-210	ENST00000521646	ZNF236	Q9UL36	1845 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms