RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 MTMR4Q9NYA4 1195 aa35.32■■■■□ 3.24
SYNPO-203ENST00000518872 DDX52Q9Y2R4 599 aaKnown RBP eCLIP35.32■■■■□ 3.24
SYNPO-203ENST00000518872 TRIM6-TRIM34B2RNG4 842 aa35.31■■■■□ 3.24
SYNPO-203ENST00000518872 STRNO43815 780 aa35.31■■■■□ 3.24
SYNPO-203ENST00000518872 TRIM32Q13049 653 aa35.31■■■■□ 3.24
SYNPO-203ENST00000518872 VPS53Q5VIR6 699 aa35.31■■■■□ 3.24
SYNPO-203ENST00000518872 CEP95Q96GE4 821 aa35.31■■■■□ 3.24
SYNPO-203ENST00000518872 ZMYM6O95789 1325 aa35.31■■■■□ 3.24
SYNPO-203ENST00000518872 PPP1R9AQ9ULJ8 1098 aa35.3■■■■□ 3.24
SYNPO-203ENST00000518872 CEP290O15078 2479 aa35.3■■■■□ 3.24
SYNPO-203ENST00000518872 F5H6K3 240 aa35.29■■■■□ 3.24
SYNPO-203ENST00000518872 TTLL1O95922 423 aa35.29■■■■□ 3.24
SYNPO-203ENST00000518872 KLRC3Q07444 240 aa35.29■■■■□ 3.24
SYNPO-203ENST00000518872 WDR78Q5VTH9 848 aa35.29■■■■□ 3.24
SYNPO-203ENST00000518872 MROH8Q9H579 483 aa35.29■■■■□ 3.24
SYNPO-203ENST00000518872 TSPY3P0CV98 308 aa35.28■■■■□ 3.24
SYNPO-203ENST00000518872 TSPY8P0CW00 308 aa35.28■■■■□ 3.24
SYNPO-203ENST00000518872 PRKAR2AP13861 404 aaKnown RBP35.28■■■■□ 3.24
SYNPO-203ENST00000518872 NMIQ13287 307 aaPredicted RBP35.28■■■■□ 3.24
SYNPO-203ENST00000518872 FAM83BQ5T0W9 1011 aa35.28■■■■□ 3.24
SYNPO-203ENST00000518872 RILPL2Q969X0 211 aa35.28■■■■□ 3.24
SYNPO-203ENST00000518872 FBXO28Q9NVF7 368 aa35.28■■■■□ 3.24
SYNPO-203ENST00000518872 CLIP2Q9UDT6 1046 aa35.28■■■■□ 3.24
SYNPO-203ENST00000518872 FARP2O94887 1054 aaPredicted RBP35.27■■■■□ 3.24
SYNPO-203ENST00000518872 NDUFB10O96000 172 aa35.27■■■■□ 3.24
SYNPO-203ENST00000518872 FGRP09769 529 aa35.27■■■■□ 3.24
SYNPO-203ENST00000518872 ERCC3P19447 782 aa35.27■■■■□ 3.24
SYNPO-203ENST00000518872 CCL14Q16627 93 aa35.27■■■■□ 3.24
SYNPO-203ENST00000518872 PPP4R3BQ5MIZ7 849 aa35.27■■■■□ 3.24
SYNPO-203ENST00000518872 ZNFX1Q9P2E3 1918 aaKnown RBP35.27■■■■□ 3.24
SYNPO-203ENST00000518872 TMEM132BQ14DG7 1078 aa35.26■■■■□ 3.24
SYNPO-203ENST00000518872 ABRAQ8N0Z2 381 aa35.26■■■■□ 3.24
SYNPO-203ENST00000518872 ANKLE1Q8NAG6 615 aa35.26■■■■□ 3.24
SYNPO-203ENST00000518872 GMCL1P1Q8NEA9 526 aa35.26■■■■□ 3.24
SYNPO-203ENST00000518872 CCDC171Q6TFL3 1326 aa35.26■■■■□ 3.23
SYNPO-203ENST00000518872 VWA5AO00534 786 aa35.25■■■■□ 3.23
SYNPO-203ENST00000518872 SLC25A27O95847 323 aa35.25■■■■□ 3.23
SYNPO-203ENST00000518872 IGHA2P01877 340 aa35.25■■■■□ 3.23
SYNPO-203ENST00000518872 TFRCP02786 760 aaKnown RBP35.25■■■■□ 3.23
SYNPO-203ENST00000518872 HSPD1P10809 573 aaKnown RBP35.25■■■■□ 3.23
SYNPO-203ENST00000518872 SDSP20132 328 aa35.25■■■■□ 3.23
SYNPO-203ENST00000518872 TFAP4Q01664 338 aa35.25■■■■□ 3.23
SYNPO-203ENST00000518872 CACNB2Q08289 660 aaPredicted RBP35.25■■■■□ 3.23
SYNPO-203ENST00000518872 ZNF589Q86UQ0 364 aaPredicted RBP35.25■■■■□ 3.23
SYNPO-203ENST00000518872 ORC4O43929 436 aa35.24■■■■□ 3.23
SYNPO-203ENST00000518872 FGAP02671 866 aa35.24■■■■□ 3.23
SYNPO-203ENST00000518872 REPS2Q8NFH8 660 aa35.24■■■■□ 3.23
SYNPO-203ENST00000518872 RAD21O60216 631 aa35.23■■■■□ 3.23
SYNPO-203ENST00000518872 MFAP1P55081 439 aaKnown RBP35.23■■■■□ 3.23
SYNPO-203ENST00000518872 CTDSPL2Q05D32 466 aa35.23■■■■□ 3.23
SYNPO-203ENST00000518872 FAM47AQ5JRC9 791 aa35.23■■■■□ 3.23
SYNPO-203ENST00000518872 RIOX2Q8IUF8 465 aa35.23■■■■□ 3.23
SYNPO-203ENST00000518872 SLF1Q9BQI6 1058 aa35.23■■■■□ 3.23
SYNPO-203ENST00000518872 HTATIP2Q9BUP3 242 aa35.23■■■■□ 3.23
SYNPO-203ENST00000518872 ZNF214Q9UL59 606 aaPredicted RBP35.23■■■■□ 3.23
SYNPO-203ENST00000518872 ADORA2AP29274 412 aa35.22■■■■□ 3.23
SYNPO-203ENST00000518872 COPB2P35606 906 aa35.22■■■■□ 3.23
SYNPO-203ENST00000518872 PLS1Q14651 629 aa35.22■■■■□ 3.23
SYNPO-203ENST00000518872 MFSD14CQ5VZR4 134 aa35.21■■■■□ 3.23
SYNPO-203ENST00000518872 NCAPG2Q86XI2 1143 aa35.21■■■■□ 3.23
SYNPO-203ENST00000518872 PRPF38AQ8NAV1 312 aaKnown RBP35.21■■■■□ 3.23
SYNPO-203ENST00000518872 NPLOC4Q8TAT6 608 aa35.21■■■■□ 3.23
SYNPO-203ENST00000518872 NUP88Q99567 741 aaPredicted RBP35.21■■■■□ 3.23
SYNPO-203ENST00000518872 FLRT1Q9NZU1 646 aa35.21■■■■□ 3.23
SYNPO-203ENST00000518872 OGDHLQ9ULD0 1010 aa35.21■■■■□ 3.23
SYNPO-203ENST00000518872 HIP1O00291 1037 aa35.2■■■■□ 3.23
SYNPO-203ENST00000518872 NOVP48745 357 aa35.2■■■■□ 3.23
SYNPO-203ENST00000518872 OLFML2BQ68BL8 750 aa35.2■■■■□ 3.23
SYNPO-203ENST00000518872 TACC3Q9Y6A5 838 aa35.2■■■■□ 3.23
SYNPO-203ENST00000518872 FRMPD3Q5JV73 1810 aa35.2■■■■□ 3.23
SYNPO-203ENST00000518872 TSPY2A6NKD2 308 aa35.19■■■■□ 3.22
SYNPO-203ENST00000518872 STAT3P40763 770 aa35.19■■■■□ 3.22
SYNPO-203ENST00000518872 DPP9Q86TI2 863 aa35.19■■■■□ 3.22
SYNPO-203ENST00000518872 SLC5A4Q9NY91 659 aa35.19■■■■□ 3.22
SYNPO-203ENST00000518872 ATP2A1O14983 1001 aa35.18■■■■□ 3.22
SYNPO-203ENST00000518872 SAMD1Q6SPF0 538 aaPredicted RBP35.18■■■■□ 3.22
SYNPO-203ENST00000518872 LRRC47Q8N1G4 583 aaKnown RBP35.18■■■■□ 3.22
SYNPO-203ENST00000518872 IL17RBQ9NRM6 502 aa35.18■■■■□ 3.22
SYNPO-203ENST00000518872 FEM1BQ9UK73 627 aa35.18■■■■□ 3.22
SYNPO-203ENST00000518872 LAMA4Q16363 1823 aa35.18■■■■□ 3.22
SYNPO-203ENST00000518872 PCP11498 1178 aaKnown RBP35.17■■■■□ 3.22
SYNPO-203ENST00000518872 INCENPQ9NQS7 918 aa35.17■■■■□ 3.22
SYNPO-203ENST00000518872 FCER1AP12319 257 aa35.16■■■■□ 3.22
SYNPO-203ENST00000518872 PDE4AP27815 886 aa35.16■■■■□ 3.22
SYNPO-203ENST00000518872 CCND3P30281 292 aaPredicted RBP35.16■■■■□ 3.22
SYNPO-203ENST00000518872 SLFN13Q68D06 897 aa35.16■■■■□ 3.22
SYNPO-203ENST00000518872 GMCL1Q96IK5 515 aa35.16■■■■□ 3.22
SYNPO-203ENST00000518872 TEX13BQ9BXU2 312 aa35.16■■■■□ 3.22
SYNPO-203ENST00000518872 DIAPH3Q9NSV4 1193 aa35.16■■■■□ 3.22
SYNPO-203ENST00000518872 PLXNA1Q9UIW2 1896 aa35.16■■■■□ 3.22
SYNPO-203ENST00000518872 COBLO75128 1261 aa35.15■■■■□ 3.22
SYNPO-203ENST00000518872 IRX6P78412 446 aaPredicted RBP35.15■■■■□ 3.22
SYNPO-203ENST00000518872 RANBP6O60518 1105 aaKnown RBP35.14■■■■□ 3.22
SYNPO-203ENST00000518872 FDX1P10109 184 aa35.14■■■■□ 3.22
SYNPO-203ENST00000518872 BMP3P12645 472 aa35.14■■■■□ 3.22
SYNPO-203ENST00000518872 MNX1P50219 401 aaPredicted RBP35.14■■■■□ 3.22
SYNPO-203ENST00000518872 LHX8Q68G74 356 aa35.14■■■■□ 3.22
SYNPO-203ENST00000518872 NECAB2Q7Z6G3 386 aa35.14■■■■□ 3.22
SYNPO-203ENST00000518872 PAWRQ96IZ0 340 aaKnown RBP35.14■■■■□ 3.22
SYNPO-203ENST00000518872 ALPK3Q96L96 1907 aa35.14■■■■□ 3.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms