RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 ARHGEF10LQ9HCE6 1279 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 RAVER2Q9HCJ3 691 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 ALAS1P13196 640 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 FLT3LGP49771 235 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 GTF2A1P52655 376 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 PPATQ06203 517 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 ZMYM1Q5SVZ6 1142 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 PRAMEF19Q5SWL8 479 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 TTBK2Q6IQ55 1244 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 UPF3BQ9BZI7 483 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 TXNRD2Q9NNW7 524 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 ATP8A2Q9NTI2 1148 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 CCDC171Q6TFL3 1326 aa9.2□□□□□ -0.94
LIMCH1-219ENST00000514096 CA12O43570 354 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 ZFYP08048 801 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 VCAM1P19320 739 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 IRX5P78411 483 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 KIAA1755Q5JYT7 1200 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 FAM163AQ96GL9 167 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 HERC5Q9UII4 1024 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 PPP4CP60510 307 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 IMMTQ16891 758 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 CENPQQ7L2Z9 268 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 DDX11Q96FC9 970 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 UPF2Q9HAU5 1272 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 IFIT3O14879 490 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 ATN1P54259 1190 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 SP4Q02446 784 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 TRIM32Q13049 653 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 PPIL2Q13356 520 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 COL9A3Q14050 684 aaPredicted RBP9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 CASC1Q6TDU7 716 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 TBC1D10CQ8IV04 446 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 EMILIN3Q9NT22 766 aa9.19□□□□□ -0.94
LIMCH1-219ENST00000514096 F5H6K3 240 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 ZBTB48P10074 688 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 OSBPP22059 807 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 PTGS1P23219 599 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 UBXN2AP68543 259 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 KLRC3Q07444 240 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 SLFN13Q68D06 897 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 FASTKD5Q7L8L6 764 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 OTOP1Q7RTM1 612 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 PURBQ96QR8 312 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 PARK7Q99497 189 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 AFG3L2Q9Y4W6 797 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 RASA1P20936 1047 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 CYP2C19P33261 490 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 HERVK_113P62684 666 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 JMYQ8N9B5 988 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 MICU3Q86XE3 530 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 RUFY2Q8WXA3 655 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 FERMT2Q96AC1 680 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 ARPP21Q9UBL0 812 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 DOCK3Q8IZD9 2030 aa9.18□□□□□ -0.94
LIMCH1-219ENST00000514096 TLR2O60603 784 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 CHMLP26374 656 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 CCL14Q16627 93 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 COA7Q96BR5 231 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 TRIM47Q96LD4 638 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 TMEM106CQ9BVX2 250 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 RBM8AQ9Y5S9 174 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 LRRC37AA6NMS7 1700 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 BAZ2AQ9UIF9 1905 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 PTPDC1A2A3K4 754 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 ZNF500O60304 480 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 XRCC6P12956 609 aaKnown RBP eCLIP9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 FKBP1CQ5VVH2 108 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 LENG1Q96BZ8 264 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 DEFB118Q96PH6 123 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 PRUNE2Q8WUY3 3088 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 NEDD4P46934 1319 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 ERICH2A1L162 156 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 EN2P19622 333 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 CALML3P27482 149 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 CTU1Q7Z7A3 348 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 ANKRD35Q8N283 1001 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 DPF3Q92784 378 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 CALR3Q96L12 384 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 SENP2Q9HC62 589 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 PKD2L1Q9P0L9 805 aa9.17□□□□□ -0.94
LIMCH1-219ENST00000514096 NDUFB10O96000 172 aa9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 SNRNP48Q6IEG0 339 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 TMEM179Q6ZVK1 233 aa9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 IQCA1Q86XH1 822 aa9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 ZNF512BQ96KM6 892 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 MRIQ9BWK5 157 aa9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 VCANP13611 3396 aa9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 ALDH1A1P00352 501 aa9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 KAT14Q9H8E8 782 aa9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 MYPNQ86TC9 1320 aa9.16□□□□□ -0.94
LIMCH1-219ENST00000514096 CTGFP29279 349 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 LACTBP83111 547 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 MTERF4Q7Z6M4 381 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 FCHSD1Q86WN1 690 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 AGBL1Q96MI9 1066 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 GTPBP4Q9BZE4 634 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 KANSL2Q9H9L4 492 aa9.15□□□□□ -0.94
LIMCH1-219ENST00000514096 ZNF287Q9HBT7 754 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms