RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 TMEM132BQ14DG7 1078 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 MFSD5Q6N075 450 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 C16orf59Q7L2K0 433 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 LENG1Q96BZ8 264 aaPredicted RBP13.32□□□□□ -0.28
DDX41-216ENST00000513562 RIOK1Q9BRS2 568 aaKnown RBP13.32□□□□□ -0.28
DDX41-216ENST00000513562 STARD7Q9NQZ5 370 aa13.32□□□□□ -0.28
DDX41-216ENST00000513562 TLR7Q9NYK1 1049 aaKnown RBP13.32□□□□□ -0.28
DDX41-216ENST00000513562 MOXD2PA6NHM9 499 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 GRXCR1A8MXD5 290 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 MPHOSPH10O00566 681 aaKnown RBP13.31□□□□□ -0.28
DDX41-216ENST00000513562 POLR3DP05423 398 aaPredicted RBP13.31□□□□□ -0.28
DDX41-216ENST00000513562 PPIGQ13427 754 aaKnown RBP eCLIP13.31□□□□□ -0.283e-8■■■□□ 15
DDX41-216ENST00000513562 ADGRE1Q14246 886 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 ZNF792Q3KQV3 632 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 TMEM240Q5SV17 173 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 CCDC174Q6PII3 467 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 TMEM179Q6ZVK1 233 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 NUP133Q8WUM0 1156 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 MMP19Q99542 508 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 SYNRGQ9UMZ2 1314 aa13.31□□□□□ -0.28
DDX41-216ENST00000513562 PGK2P07205 417 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 HOXD11P31277 338 aaPredicted RBP13.3□□□□□ -0.28
DDX41-216ENST00000513562 EVX2Q03828 476 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 OS9Q13438 667 aaPredicted RBP13.3□□□□□ -0.28
DDX41-216ENST00000513562 CCSAPQ6IQ19 270 aaPredicted RBP13.3□□□□□ -0.28
DDX41-216ENST00000513562 CCDC129Q6ZRS4 1044 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 RIOX2Q8IUF8 465 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 SIAH1Q8IUQ4 282 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 KLHDC9Q8NEP7 349 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 SSH3Q8TE77 659 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 ANTXR1Q9H6X2 564 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 VCPKMTQ9H867 229 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 ADAMTS5Q9UNA0 930 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 TMX2Q9Y320 296 aa13.3□□□□□ -0.28
DDX41-216ENST00000513562 WDR46O15213 610 aaKnown RBP13.29□□□□□ -0.28
DDX41-216ENST00000513562 TRIM27P14373 513 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 KCTD2Q14681 263 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 PSRC1Q6PGN9 363 aaPredicted RBP13.29□□□□□ -0.28
DDX41-216ENST00000513562 SPICE1Q8N0Z3 855 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 IL27Q8NEV9 243 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 SH2D4AQ9H788 454 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 CNPY2Q9Y2B0 182 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 ELP1O95163 1332 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 MROH7Q68CQ1 1323 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 CHD7Q9P2D1 2997 aa13.29□□□□□ -0.28
DDX41-216ENST00000513562 CSF2RAP15509 400 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 CST5P28325 142 aaPredicted RBP13.28□□□□□ -0.28
DDX41-216ENST00000513562 CDK7P50613 346 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 ICA1Q05084 483 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 RAB30Q15771 203 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 CCDC85BQ15834 202 aaPredicted RBP13.28□□□□□ -0.28
DDX41-216ENST00000513562 KCNA10Q16322 511 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 CLEC10AQ8IUN9 316 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 MSL3Q8N5Y2 521 aaKnown RBP13.28□□□□□ -0.28
DDX41-216ENST00000513562 EAF2Q96CJ1 260 aaPredicted RBP13.28□□□□□ -0.28
DDX41-216ENST00000513562 C1QTNF1Q9BXJ1 281 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 CCDC8Q9H0W5 538 aaPredicted RBP13.28□□□□□ -0.28
DDX41-216ENST00000513562 ARHGEF10LQ9HCE6 1279 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 MCM9Q9NXL9 1143 aa13.28□□□□□ -0.28
DDX41-216ENST00000513562 CXXC1Q9P0U4 656 aaPredicted RBP13.28□□□□□ -0.28
DDX41-216ENST00000513562 BDP1A6H8Y1 2624 aa13.27□□□□□ -0.28
DDX41-216ENST00000513562 MAGEB6P1A0A0J9YX57 407 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 MYADML2A6NDP7 307 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 SURF6O75683 361 aaKnown RBP13.27□□□□□ -0.29
DDX41-216ENST00000513562 IGFBP4P22692 258 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 COPB2P35606 906 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 STAT3P40763 770 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 SAMD1Q6SPF0 538 aaPredicted RBP13.27□□□□□ -0.29
DDX41-216ENST00000513562 ZNF365Q70YC5 407 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 TMEM199Q8N511 208 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 REPS2Q8NFH8 660 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 GLT1D1Q96MS3 346 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 CRNKL1Q9BZJ0 848 aaKnown RBP13.27□□□□□ -0.29
DDX41-216ENST00000513562 DCP1AQ9NPI6 582 aaPredicted RBP13.27□□□□□ -0.29
DDX41-216ENST00000513562 FBXO28Q9NVF7 368 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 SWAP70Q9UH65 585 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 MSRAQ9UJ68 235 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 ZNF214Q9UL59 606 aaPredicted RBP13.27□□□□□ -0.29
DDX41-216ENST00000513562 FAM184BQ9ULE4 1060 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 TNNQ9UQP3 1299 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 NOP58Q9Y2X3 529 aaKnown RBP13.27□□□□□ -0.29
DDX41-216ENST00000513562 SYNGAP1Q96PV0 1343 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 MYH1P12882 1939 aa13.27□□□□□ -0.29
DDX41-216ENST00000513562 VWA5AO00534 786 aa13.26□□□□□ -0.29
DDX41-216ENST00000513562 IPO8O15397 1037 aaKnown RBP13.26□□□□□ -0.29
DDX41-216ENST00000513562 DUSP11O75319 330 aaKnown RBP13.26□□□□□ -0.29
DDX41-216ENST00000513562 SNAI1O95863 264 aaPredicted RBP13.26□□□□□ -0.29
DDX41-216ENST00000513562 ACRP10323 421 aa13.26□□□□□ -0.29
DDX41-216ENST00000513562 AKR1B1P15121 316 aa13.26□□□□□ -0.29
DDX41-216ENST00000513562 MAMDC4Q6UXC1 1216 aa13.26□□□□□ -0.29
DDX41-216ENST00000513562 FAM126BQ8IXS8 530 aa13.26□□□□□ -0.29
DDX41-216ENST00000513562 HERVK_113Q902F9 699 aa13.26□□□□□ -0.29
DDX41-216ENST00000513562 NECAB3Q96P71 396 aaPredicted RBP13.26□□□□□ -0.29
DDX41-216ENST00000513562 PPP1R9AQ9ULJ8 1098 aa13.26□□□□□ -0.29
DDX41-216ENST00000513562 YBX2Q9Y2T7 364 aaKnown RBP13.26□□□□□ -0.29
DDX41-216ENST00000513562 ARIH1Q9Y4X5 557 aaPredicted RBP13.26□□□□□ -0.29
DDX41-216ENST00000513562 A0A0U1RQG5 324 aaPredicted RBP13.25□□□□□ -0.29
DDX41-216ENST00000513562 ARVCFO00192 962 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 ASGR1P07306 291 aa13.25□□□□□ -0.29
DDX41-216ENST00000513562 CYP2D6P10635 497 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms