RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 PLEKHA4Q9H4M7 779 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 NCOA5Q9HCD5 579 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 TTC41PQ6P2S7 1318 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 RIMS2Q9UQ26 1411 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 KRT9P35527 623 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 MTX1Q13505 466 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 ELMSAN1Q6PJG2 1045 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 SULF1Q8IWU6 871 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 AFAP1L2Q8N4X5 818 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 GFM2Q969S9 779 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 NOC4LQ9BVI4 516 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 KCNH3Q9ULD8 1083 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 CTNND2Q9UQB3 1225 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 NFE2L3Q9Y4A8 694 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 DAAM1Q9Y4D1 1078 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 E9PMD0 336 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 RGS16O15492 202 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 SUN1O94901 812 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 ERCC5P28715 1186 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 SERPINB6P35237 376 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 TERF2Q15554 542 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 HIBCHQ6NVY1 386 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 C16orf87Q6PH81 154 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 MAP7D3Q8IWC1 876 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 CRNKL1Q9BZJ0 848 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 CSRNP2Q9H175 543 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 FAM204AQ9H8W3 233 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 CHCHD3Q9NX63 227 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 IMPACTQ9P2X3 320 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 TRPM2O94759 1503 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 SNX16P57768 344 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 CUL3Q13618 768 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 ZNF174Q15697 407 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 CYP26C1Q6V0L0 522 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 DTHD1Q6ZMT9 781 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 TEX11Q8IYF3 940 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 CCT6BQ92526 530 aa9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 ABT1Q9ULW3 272 aaKnown RBP9.61□□□□□ -0.87
LIMCH1-218ENST00000513024 RWDD2BP57060 319 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 NBPF9Q3BBW0 867 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 SLC30A9Q6PML9 568 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 SLF1Q9BQI6 1058 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 DDX41Q9UJV9 622 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 KRT10P13645 584 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 KRT2P35908 639 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 APBA1Q02410 837 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ANKRD20A4Q4UJ75 823 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ANKRD20A8PQ5CZ79 823 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 DCAF17Q5H9S7 520 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ANKRD20A2Q5SQ80 823 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 AKNAD1Q5T1N1 836 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 SEL1L2Q5TEA6 688 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ANKRD20A1Q5TYW2 823 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ATL3Q6DD88 541 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 KLHL7Q8IXQ5 586 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 SH3GL2Q99962 352 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 PDE11AQ9HCR9 933 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 GIMAP4Q9NUV9 329 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 hCG_2014768A0A024R1R8 64 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 TRAF5O00463 557 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ZBTB7BO15156 539 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 POLR2DO15514 142 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 MAP3K7O43318 606 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 KDM1AO60341 852 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 MRPS15P82914 257 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 OCA2Q04671 838 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 GEN1Q17RS7 908 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 CWF19L2Q2TBE0 894 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 NBPF20Q3BBV1 942 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ANO1Q5XXA6 986 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ZNF449Q6P9G9 518 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 FAM212AQ96EL1 285 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 MADDQ8WXG6 1647 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 MCF2LO15068 1137 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 KRT15P19012 456 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 NRBF2Q96F24 287 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 PAWRQ96IZ0 340 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 ZKSCAN3Q9BRR0 538 aa9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 XPO4Q9C0E2 1151 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-218ENST00000513024 CALML3P27482 149 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 GNAQP50148 359 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 PARP10Q53GL7 1025 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 BEND3Q5T5X7 828 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 HS2ST1Q7LGA3 356 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 FBXO18Q8NFZ0 1043 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 OSBPL9Q96SU4 736 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 SNX14Q9Y5W7 946 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 SOS1Q07889 1333 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 NSD2O96028 1365 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 ALDH1L1O75891 902 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 ZNF202O95125 648 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 IL15P40933 162 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 RBM6P78332 1123 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 SLC39A6Q13433 755 aa9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 ENAHQ8N8S7 591 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 RNF113AO15541 343 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 CTNNA1P35221 906 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 BASP1P80723 227 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-218ENST00000513024 DENND2CQ68D51 928 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms