RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ZCCHC17Q9NP64 241 aaKnown RBP34.65■■■■□ 3.14
LIMCH1-211ENST00000509638 SLC45A1Q9Y2W3 748 aa34.65■■■■□ 3.14
LIMCH1-211ENST00000509638 SNHG28P0DPA3 235 aa34.64■■■■□ 3.14
LIMCH1-211ENST00000509638 NEK4P51957 841 aa34.64■■■■□ 3.14
LIMCH1-211ENST00000509638 MYL10Q9BUA6 226 aa34.64■■■■□ 3.14
LIMCH1-211ENST00000509638 USP17L15C9J2P7 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 USP17L13C9JLJ4 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 USP17L11C9JVI0 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 USP17L18D6R9N7 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 USP17L22D6RA61 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 USP17L17D6RBQ6 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 USP17L19D6RCP7 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 USP17L20D6RJB6 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 BMP3P12645 472 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 HOXA7P31268 230 aaPredicted RBP34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 USP17L24Q0WX57 530 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 TOB2Q14106 344 aaPredicted RBP34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 SLC12A7Q9Y666 1083 aa34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 FRMPD2Q68DX3 1309 aaPredicted RBP34.63■■■■□ 3.13
LIMCH1-211ENST00000509638 IRX3P78415 501 aaPredicted RBP34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 KCTD1Q719H9 257 aa34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 ASCC2Q9H1I8 757 aaPredicted RBP34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 PNMA3Q9UL41 463 aa34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 DDAH1O94760 285 aa34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 APOBRQ0VD83 1088 aa34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 TROAPQ12815 778 aa34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 APOA5Q6Q788 366 aa34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 CATSPERGQ6ZRH7 1159 aa34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 BRPF3Q9ULD4 1205 aa34.62■■■■□ 3.13
LIMCH1-211ENST00000509638 A0A0G2JMZ2 1700 aa34.61■■■■□ 3.13
LIMCH1-211ENST00000509638 KLF18A0A0U1RQI7 1052 aa34.61■■■■□ 3.13
LIMCH1-211ENST00000509638 RABEP1Q15276 862 aa34.61■■■■□ 3.13
LIMCH1-211ENST00000509638 TAF1CQ15572 869 aaPredicted RBP34.61■■■■□ 3.13
LIMCH1-211ENST00000509638 PARK7Q99497 189 aaKnown RBP34.61■■■■□ 3.13
LIMCH1-211ENST00000509638 FLOT1O75955 427 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 ALDH1A1P00352 501 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 CYP2C8P10632 490 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 OSBPP22059 807 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 ZNF543Q08ER8 600 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 MICU3Q86XE3 530 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 RAB11FIP4Q86YS3 637 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 NUP133Q8WUM0 1156 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 FBXO28Q9NVF7 368 aa34.6■■■■□ 3.13
LIMCH1-211ENST00000509638 MAP2K1Q02750 393 aaPredicted RBP34.59■■■■□ 3.13
LIMCH1-211ENST00000509638 COL11A1P12107 1806 aaPredicted RBP34.58■■■■□ 3.13
LIMCH1-211ENST00000509638 RXRAP19793 462 aa34.58■■■■□ 3.13
LIMCH1-211ENST00000509638 AK2P54819 239 aa34.58■■■■□ 3.13
LIMCH1-211ENST00000509638 NAP1L2Q9ULW6 460 aaPredicted RBP34.58■■■■□ 3.13
LIMCH1-211ENST00000509638 GOLGA8BA8MQT2 603 aa34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 TMEM232C9JQI7 657 aa34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 PARP1P09874 1014 aaKnown RBP34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 GOLGA8HP0CJ92 632 aa34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 STAT2P52630 851 aa34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 IKQ13123 557 aaPredicted RBP34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 GRM4Q14833 912 aa34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 ASPRV1Q53RT3 343 aa34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 SAMD1Q6SPF0 538 aaPredicted RBP34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 SMCR8Q8TEV9 937 aaPredicted RBP34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 GPCPD1Q9NPB8 672 aa34.57■■■■□ 3.13
LIMCH1-211ENST00000509638 GPATCH4Q5T3I0 446 aaKnown RBP34.57■■■■□ 3.12
LIMCH1-211ENST00000509638 SYNE3Q6ZMZ3 975 aa34.57■■■■□ 3.12
LIMCH1-211ENST00000509638 ALDH8A1Q9H2A2 487 aaPredicted RBP34.57■■■■□ 3.12
LIMCH1-211ENST00000509638 RNF186Q9NXI6 227 aa34.57■■■■□ 3.12
LIMCH1-211ENST00000509638 ZBTB43O43298 467 aa34.56■■■■□ 3.12
LIMCH1-211ENST00000509638 CRHR2Q13324 411 aa34.56■■■■□ 3.12
LIMCH1-211ENST00000509638 CCDC144CPQ8IYA2 1237 aa34.56■■■■□ 3.12
LIMCH1-211ENST00000509638 SLF1Q9BQI6 1058 aa34.56■■■■□ 3.12
LIMCH1-211ENST00000509638 LARP6Q9BRS8 491 aaKnown RBP34.56■■■■□ 3.12
LIMCH1-211ENST00000509638 FEM1BQ9UK73 627 aa34.56■■■■□ 3.12
LIMCH1-211ENST00000509638 CALM1P0DP23 149 aa34.55■■■■□ 3.12
LIMCH1-211ENST00000509638 CALM2P0DP24 149 aa34.55■■■■□ 3.12
LIMCH1-211ENST00000509638 CALM3P0DP25 149 aa34.55■■■■□ 3.12
LIMCH1-211ENST00000509638 HERVK_113P62684 666 aa34.55■■■■□ 3.12
LIMCH1-211ENST00000509638 TTBK2Q6IQ55 1244 aa34.55■■■■□ 3.12
LIMCH1-211ENST00000509638 P2RX7Q99572 595 aaKnown RBP34.55■■■■□ 3.12
LIMCH1-211ENST00000509638 MAD2L2Q9UI95 211 aa34.55■■■■□ 3.12
LIMCH1-211ENST00000509638 PPP1R9AQ9ULJ8 1098 aa34.55■■■■□ 3.12
LIMCH1-211ENST00000509638 SPDYE16A6NNV3 312 aaPredicted RBP34.54■■■■□ 3.12
LIMCH1-211ENST00000509638 TRPA1O75762 1119 aa34.54■■■■□ 3.12
LIMCH1-211ENST00000509638 COG2Q14746 738 aa34.54■■■■□ 3.12
LIMCH1-211ENST00000509638 ANKRD1Q15327 319 aa34.54■■■■□ 3.12
LIMCH1-211ENST00000509638 JMYQ8N9B5 988 aa34.54■■■■□ 3.12
LIMCH1-211ENST00000509638 CTCFLQ8NI51 663 aaPredicted RBP34.54■■■■□ 3.12
LIMCH1-211ENST00000509638 MAP3K14Q99558 947 aa34.54■■■■□ 3.12
LIMCH1-211ENST00000509638 MYPNQ86TC9 1320 aa34.54■■■■□ 3.12
LIMCH1-211ENST00000509638 CA12O43570 354 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 NOL8Q76FK4 1167 aaKnown RBP34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 STAG2Q8N3U4 1231 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 KIFC2Q96AC6 838 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 ZFYVE28Q9HCC9 887 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 SLC16A2P36021 539 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 EVCP57679 992 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 FAM160B2Q86V87 743 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 ATG4CQ96DT6 458 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 BEGAINQ9BUH8 593 aa34.53■■■■□ 3.12
LIMCH1-211ENST00000509638 ADGRA2Q96PE1 1338 aa34.52■■■■□ 3.12
LIMCH1-211ENST00000509638 GOLGA8AA7E2F4 631 aa34.52■■■■□ 3.12
LIMCH1-211ENST00000509638 DSG3P32926 999 aa34.52■■■■□ 3.12
LIMCH1-211ENST00000509638 RCAN1P53805 252 aa34.52■■■■□ 3.12
LIMCH1-211ENST00000509638 CHURC1Q8WUH1 139 aa34.52■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms