RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 ZSWIM6Q9HCJ5 1215 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 PNMA3Q9UL41 463 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 SYNPO2Q9UMS6 1093 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 AGTPBP1Q9UPW5 1226 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 CTDP1Q9Y5B0 961 aaPredicted RBP9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 SLC12A7Q9Y666 1083 aa9.61□□□□□ -0.87
LIMCH1-206ENST00000505705 FRMPD2Q68DX3 1309 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 TESPA1A2RU30 521 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 TMEM232C9JQI7 657 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 WDR46O15213 610 aaKnown RBP9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 FLOT1O75955 427 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 NDUFB10O96000 172 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 LIFRP42702 1097 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 SEC23AQ15436 765 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 TAF1CQ15572 869 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 RCSD1Q6JBY9 416 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 FAM43AQ8N2R8 423 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 SMCR8Q8TEV9 937 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 DCAF4Q8WV16 495 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 ANKS1AQ92625 1134 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 BRF1Q92994 677 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 C12orf42Q96LP6 360 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 TBC1D32Q96NH3 1257 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 NUP88Q99567 741 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 PTPN18Q99952 460 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 LY9Q9HBG7 655 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 ZFYVE28Q9HCC9 887 aa9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 GPHNQ9NQX3 736 aaPredicted RBP9.6□□□□□ -0.87
LIMCH1-206ENST00000505705 KLF18A0A0U1RQI7 1052 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 IGF2BP3O00425 579 aaKnown RBP eCLIP9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 DHX16O60231 1041 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 TRPA1O75762 1119 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 PARP1P09874 1014 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 GOLGA8HP0CJ92 632 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 CALM1P0DP23 149 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 CALM2P0DP24 149 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 CALM3P0DP25 149 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 NOVP48745 357 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 APOBRQ0VD83 1088 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 COL9A3Q14050 684 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 RABEP1Q15276 862 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 ANKRD1Q15327 319 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 KIAA1755Q5JYT7 1200 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 GPAT2Q6NUI2 795 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 CATSPERGQ6ZRH7 1159 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 KCTD1Q719H9 257 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 NOL8Q76FK4 1167 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 RAB11FIP4Q86YS3 637 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 ZNF654Q8IZM8 581 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 CTCFLQ8NI51 663 aaPredicted RBP9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 CHURC1Q8WUH1 139 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 PARK7Q99497 189 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 LARP6Q9BRS8 491 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 MYL10Q9BUA6 226 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 SENP2Q9HC62 589 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 GPCPD1Q9NPB8 672 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 HOXC10Q9NYD6 342 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 FEM1BQ9UK73 627 aa9.59□□□□□ -0.87
LIMCH1-206ENST00000505705 ZBTB43O43298 467 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 ST18O60284 1047 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 DDAH1O94760 285 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 CYP2C8P10632 490 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 PDHBP11177 359 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 RXRAP19793 462 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 HOXA7P31268 230 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 KIF5BP33176 963 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 STAT2P52630 851 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 MOGSQ13724 837 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 COG2Q14746 738 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 GPATCH4Q5T3I0 446 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 FAM160B2Q86V87 743 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 MICU3Q86XE3 530 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 CCDC144CPQ8IYA2 1237 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 DNAJC5GQ8N7S2 189 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 KIFC2Q96AC6 838 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 GMCL1Q96IK5 515 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 ASCC2Q9H1I8 757 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 RNF186Q9NXI6 227 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 SLC45A1Q9Y2W3 748 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 PHIPQ8WWQ0 1821 aa9.58□□□□□ -0.88
LIMCH1-206ENST00000505705 GREB1LQ9C091 1923 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 MYH4Q9Y623 1939 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 GOLGA8AA7E2F4 631 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 GOLGA8BA8MQT2 603 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 CA12O43570 354 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 ZBED4O75132 1171 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 TBC1D8O95759 1140 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 SLC16A2P36021 539 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 SLC4A3P48751 1232 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 METAP2P50579 478 aaKnown RBP eCLIP9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 AK2P54819 239 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 STK3Q13188 491 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 TOB2Q14106 344 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 ASPRV1Q53RT3 343 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 TTBK2Q6IQ55 1244 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 RASGRP2Q7LDG7 609 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 SGMS1Q86VZ5 419 aa9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 CCAR1Q8IX12 1150 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 PRPF38AQ8NAV1 312 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-206ENST00000505705 GTF3C2Q8WUA4 911 aaPredicted RBP9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms