RNA–Protein interactions for RNA: ENST00000504289.1

COL1A1-210, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 481 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-210ENST00000504289 CLIC6Q96NY7 704 aa11.19□□□□□ -0.62
COL1A1-210ENST00000504289 ZMYND12Q9H0C1 365 aa11.19□□□□□ -0.62
COL1A1-210ENST00000504289 OSBPL5Q9H0X9 879 aaPredicted RBP11.19□□□□□ -0.62
COL1A1-210ENST00000504289 RTN4Q9NQC3 1192 aaKnown RBP11.19□□□□□ -0.62
COL1A1-210ENST00000504289 USP40Q9NVE5 1235 aa11.19□□□□□ -0.62
COL1A1-210ENST00000504289 MTMR4Q9NYA4 1195 aa11.19□□□□□ -0.62
COL1A1-210ENST00000504289 IMPACTQ9P2X3 320 aa11.19□□□□□ -0.62
COL1A1-210ENST00000504289 SYNPO2Q9UMS6 1093 aa11.19□□□□□ -0.62
COL1A1-210ENST00000504289 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.19□□□□□ -0.62
COL1A1-210ENST00000504289 TTLL1O95922 423 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 SARSP49591 514 aaKnown RBP11.18□□□□□ -0.62
COL1A1-210ENST00000504289 MMP14P50281 582 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 GSDMDP57764 484 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 POSTNQ15063 836 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 LONRF3Q496Y0 759 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 DACT2Q5SW24 774 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 GPATCH4Q5T3I0 446 aaKnown RBP11.18□□□□□ -0.62
COL1A1-210ENST00000504289 APOBEC3HQ6NTF7 200 aaKnown RBP11.18□□□□□ -0.62
COL1A1-210ENST00000504289 PPP1R18Q6NYC8 613 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 CDC42EP5Q6NZY7 148 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 KRT25Q7Z3Z0 450 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 FOXP4Q8IVH2 680 aaPredicted RBP11.18□□□□□ -0.62
COL1A1-210ENST00000504289 GTPBP4Q9BZE4 634 aaKnown RBP11.18□□□□□ -0.62
COL1A1-210ENST00000504289 GLT8D2Q9H1C3 349 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 RIOX1Q9H6W3 641 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 C6orf50Q9HD87 102 aa11.18□□□□□ -0.62
COL1A1-210ENST00000504289 SEC63Q9UGP8 760 aaKnown RBP11.18□□□□□ -0.62
COL1A1-210ENST00000504289 CCDC194A0A1B0GVG4 234 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 STXBP3O00186 592 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 CBFA2T2O43439 604 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 ENTPD3O75355 529 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 MYL1P05976 194 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 ERCC5P28715 1186 aaPredicted RBP11.17□□□□□ -0.62
COL1A1-210ENST00000504289 CRKP46108 304 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 PTGDRQ13258 359 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 DPCR1Q3MIW9 517 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 SH3RF1Q7Z6J0 888 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 SLC51AQ86UW1 340 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 METTL16Q86W50 562 aaKnown RBP11.17□□□□□ -0.62
COL1A1-210ENST00000504289 RTKN2Q8IZC4 609 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 STAG2Q8N3U4 1231 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 IQUBQ8NA54 791 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 SLC44A5Q8NCS7 719 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 SMARCE1Q969G3 411 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 CEP95Q96GE4 821 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 GSDMAQ96QA5 445 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 CSRNP2Q9H175 543 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 SPTLC3Q9NUV7 552 aa11.17□□□□□ -0.62
COL1A1-210ENST00000504289 POLR2DO15514 142 aaKnown RBP11.16□□□□□ -0.62
COL1A1-210ENST00000504289 ACTN4O43707 911 aaKnown RBP11.16□□□□□ -0.62
COL1A1-210ENST00000504289 CYTH3O43739 400 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 ECE2O60344 883 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 HOXA7P31268 230 aaPredicted RBP11.16□□□□□ -0.62
COL1A1-210ENST00000504289 TXLNAP40222 546 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 MYL5Q02045 173 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 DOK7Q18PE1 504 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 SOGA3Q5TF21 947 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 MCTP2Q6DN12 878 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 DRC7Q8IY82 874 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 AOPEPQ8N6M6 819 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 MKL1Q969V6 931 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 AK8Q96MA6 479 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 PSMD1Q99460 953 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 MAGEF1Q9HAY2 307 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 PI4KBQ9UBF8 816 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 CLIP2Q9UDT6 1046 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 PCDHA5Q9Y5H7 936 aa11.16□□□□□ -0.62
COL1A1-210ENST00000504289 GREB1LQ9C091 1923 aaPredicted RBP11.15□□□□□ -0.62
COL1A1-210ENST00000504289 hCG_1642624A0A1W2PR95 340 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 PDHBP11177 359 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 SHMT1P34896 483 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 MORC3Q14149 939 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 NCAPHQ15003 741 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 EARS2Q5JPH6 523 aaKnown RBP11.15□□□□□ -0.62
COL1A1-210ENST00000504289 WWC2Q6AWC2 1192 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 PIK3AP1Q6ZUJ8 805 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 DEFB132Q7Z7B7 95 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 C4orf32Q8N8J7 132 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 KIAA1524Q8TCG1 905 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 FBXW7Q969H0 707 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 NAP1L4Q99733 375 aaKnown RBP11.15□□□□□ -0.62
COL1A1-210ENST00000504289 CUEDC2Q9H467 287 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 DDX4Q9NQI0 724 aaKnown RBP11.15□□□□□ -0.62
COL1A1-210ENST00000504289 NYAP2Q9P242 653 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 PCDHA6Q9UN73 950 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 PCDHA8Q9Y5H6 950 aa11.15□□□□□ -0.62
COL1A1-210ENST00000504289 ATRNL1Q5VV63 1379 aa11.15□□□□□ -0.63
COL1A1-210ENST00000504289 SLX4Q8IY92 1834 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 MYH8P13535 1937 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 PNMA6FA0A0J9YX94 578 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 BAG6P46379 1132 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 NAPAP54920 295 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 ZNF543Q08ER8 600 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 PNOCQ13519 176 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 NONOQ15233 471 aaKnown RBP eCLIP11.14□□□□□ -0.63
COL1A1-210ENST00000504289 ZNF174Q15697 407 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 SLC35G1Q2M3R5 365 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 CCDC93Q567U6 631 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 FKBP1CQ5VVH2 108 aa11.14□□□□□ -0.63
COL1A1-210ENST00000504289 TATDN1Q6P1N9 297 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms