RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 DAGLBQ8NCG7 672 aa24.44■■□□□ 1.5
UBE2D3-216ENST00000503742 PSMD1Q99460 953 aa24.44■■□□□ 1.5
UBE2D3-216ENST00000503742 DHX36Q9H2U1 1008 aaKnown RBP24.44■■□□□ 1.5
UBE2D3-216ENST00000503742 PDHBP11177 359 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 SPECC1Q5M775 1068 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 GALNT17Q6IS24 598 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 CCDC148Q8NFR7 591 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 FAM13BQ9NYF5 915 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 TUBE1Q9UJT0 475 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 USP17L5A8MUK1 530 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 SNHG28P0DPA3 235 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 CLCN1P35523 988 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 RBM5P52756 815 aaKnown RBP eCLIP24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 CACNB3P54284 484 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 LONRF3Q496Y0 759 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 KRBA2Q6ZNG9 492 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 PIK3AP1Q6ZUJ8 805 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 DNAJC18Q9H819 358 aa24.43■■□□□ 1.5
UBE2D3-216ENST00000503742 TTLL1O95922 423 aa24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 DPEP1P16444 411 aa24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 PLCB2Q00722 1185 aa24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 CSRNP2Q9H175 543 aa24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 CPVLQ9H3G5 476 aa24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 EIF2AK3Q9NZJ5 1116 aaKnown RBP24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 ATP2C1P98194 919 aaPredicted RBP24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 CEP57L1Q8IYX8 460 aa24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 FERMT2Q96AC1 680 aa24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 CCDC17Q96LX7 622 aa24.42■■□□□ 1.5
UBE2D3-216ENST00000503742 DDTLA6NHG4 134 aaPredicted RBP24.41■■□□□ 1.5
UBE2D3-216ENST00000503742 NLRP12P59046 1061 aa24.41■■□□□ 1.5
UBE2D3-216ENST00000503742 ZNF174Q15697 407 aa24.41■■□□□ 1.5
UBE2D3-216ENST00000503742 SH3BP5LQ7L8J4 393 aa24.41■■□□□ 1.5
UBE2D3-216ENST00000503742 HEATR3Q7Z4Q2 680 aa24.41■■□□□ 1.5
UBE2D3-216ENST00000503742 METTL16Q86W50 562 aaKnown RBP24.41■■□□□ 1.5
UBE2D3-216ENST00000503742 DHX40Q8IX18 779 aaKnown RBP24.41■■□□□ 1.5
UBE2D3-216ENST00000503742 RIOX1Q9H6W3 641 aa24.41■■□□□ 1.5
UBE2D3-216ENST00000503742 TCP10Q12799 353 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 ASPRV1Q53RT3 343 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 LRRC47Q8N1G4 583 aaKnown RBP24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 CNNM3Q8NE01 707 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 NAT10Q9H0A0 1025 aaKnown RBP24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 PI4KBQ9UBF8 816 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 PTMAP06454 111 aaKnown RBP24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 MDM2Q00987 491 aaPredicted RBP24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 DPCR1Q3MIW9 517 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 CLEC10AQ8IUN9 316 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 RRP36Q96EU6 259 aaKnown RBP24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 BPIFA3Q9BQP9 254 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 CLIP2Q9UDT6 1046 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 ZKSCAN5Q9Y2L8 839 aa24.4■■□□□ 1.5
UBE2D3-216ENST00000503742 SLURP2P0DP57 97 aa24.39■■□□□ 1.49
UBE2D3-216ENST00000503742 PTGDRQ13258 359 aa24.39■■□□□ 1.49
UBE2D3-216ENST00000503742 CFAP100Q494V2 611 aa24.39■■□□□ 1.49
UBE2D3-216ENST00000503742 ZMYND12Q9H0C1 365 aa24.39■■□□□ 1.49
UBE2D3-216ENST00000503742 PCDHA6Q9UN73 950 aa24.39■■□□□ 1.49
UBE2D3-216ENST00000503742 PCDHA8Q9Y5H6 950 aa24.39■■□□□ 1.49
UBE2D3-216ENST00000503742 PNOCQ13519 176 aa24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 ZRSR1Q15695 479 aaKnown RBP24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 USP49Q70CQ1 688 aa24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 MYH4Q9Y623 1939 aa24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 COL4A5P29400 1685 aa24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 GOLGA6L19H0YKK7 550 aa24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 POLR2DO15514 142 aaKnown RBP24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 EIF6P56537 245 aaKnown RBP24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 PPP4R3BQ5MIZ7 849 aa24.38■■□□□ 1.49
UBE2D3-216ENST00000503742 RSBN1LQ6PCB5 846 aaPredicted RBP24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 SARM1Q6SZW1 724 aa24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 PLA2G4DQ86XP0 818 aa24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 FOXP4Q8IVH2 680 aaPredicted RBP24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 RASGRP4Q8TDF6 673 aa24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 CCDC12Q8WUD4 166 aaPredicted RBP24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 PRMT6Q96LA8 375 aaPredicted RBP24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 PIGSQ96S52 555 aa24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 VPS33BQ9H267 617 aa24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 TDRD3Q9H7E2 651 aaKnown RBP24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 ATRNL1Q5VV63 1379 aa24.37■■□□□ 1.49
UBE2D3-216ENST00000503742 ENTPD3O75355 529 aa24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 COL2A1P02458 1487 aaPredicted RBP24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 TATDN1Q6P1N9 297 aa24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 GMLQ99445 158 aa24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 UBA5Q9GZZ9 404 aa24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 FRMPD2Q68DX3 1309 aaPredicted RBP24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 BECN2A8MW95 431 aa24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 BIN1O00499 593 aa24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 ACTN4O43707 911 aaKnown RBP24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 VIL1P09327 827 aaKnown RBP24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 MSNP26038 577 aaKnown RBP24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 C4orf32Q8N8J7 132 aa24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 SEC63Q9UGP8 760 aaKnown RBP24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 SERTAD1Q9UHV2 236 aa24.36■■□□□ 1.49
UBE2D3-216ENST00000503742 MPHOSPH10O00566 681 aaKnown RBP24.35■■□□□ 1.49
UBE2D3-216ENST00000503742 ZNF75DP51815 510 aa24.35■■□□□ 1.49
UBE2D3-216ENST00000503742 NAPAP54920 295 aa24.35■■□□□ 1.49
UBE2D3-216ENST00000503742 ZNF543Q08ER8 600 aa24.35■■□□□ 1.49
UBE2D3-216ENST00000503742 HOMER1Q86YM7 354 aa24.35■■□□□ 1.49
UBE2D3-216ENST00000503742 ZNF277Q9NRM2 450 aaPredicted RBP24.35■■□□□ 1.49
UBE2D3-216ENST00000503742 HOOK1Q9UJC3 728 aaKnown RBP24.35■■□□□ 1.49
UBE2D3-216ENST00000503742 GOLGB1Q14789 3259 aaKnown RBP24.35■■□□□ 1.49
UBE2D3-216ENST00000503742 CCDC194A0A1B0GVG4 234 aa24.34■■□□□ 1.49
UBE2D3-216ENST00000503742 hCG_1984214I3L0E3 225 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 167.9 ms