RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CD209Q9NNX6 404 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 LTBP1Q14766 1721 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 MYH1P12882 1939 aa13.63□□□□□ -0.23
NUP54-202ENST00000502850 GPR75-ASB3A0A0A6YYF3 556 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 CTIFO43310 598 aaKnown RBP13.62□□□□□ -0.23
NUP54-202ENST00000502850 LONP1P36776 959 aaKnown RBP13.62□□□□□ -0.23
NUP54-202ENST00000502850 GPSM2P81274 684 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 GRIN1Q05586 938 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 SEMA3FQ13275 785 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 NPY5RQ15761 445 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 SPECC1Q5M775 1068 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 SH3RF1Q7Z6J0 888 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 FOXP4Q8IVH2 680 aaPredicted RBP13.62□□□□□ -0.23
NUP54-202ENST00000502850 SYMPKQ92797 1274 aaKnown RBP13.62□□□□□ -0.23
NUP54-202ENST00000502850 DHX58Q96C10 678 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 SHISA4Q96DD7 197 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 FAM163AQ96GL9 167 aaPredicted RBP13.62□□□□□ -0.23
NUP54-202ENST00000502850 RTFDC1Q9BY42 306 aaPredicted RBP13.62□□□□□ -0.23
NUP54-202ENST00000502850 RMND1Q9NWS8 449 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 PCDHA4Q9UN74 947 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 SUGT1Q9Y2Z0 365 aa13.62□□□□□ -0.23
NUP54-202ENST00000502850 LAD1O00515 517 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 NMT2O60551 498 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 SERPINB2P05120 415 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 GYS1P13807 737 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 CDK11BP21127 795 aaKnown RBP13.61□□□□□ -0.23
NUP54-202ENST00000502850 SMARCA1P28370 1054 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 PTGDRQ13258 359 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 ARID5BQ14865 1188 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 PDILTQ8N807 584 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 KIF18AQ8NI77 898 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 FANCLQ9NW38 375 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 NFE2L3Q9Y4A8 694 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 CCDC194A0A1B0GVG4 234 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 GRIN3BO60391 1043 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 PRR29P0C7W0 189 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 ATP1A3P13637 1013 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 YBX3P16989 372 aaKnown RBP eCLIP13.61□□□□□ -0.239e-8■■■■□ 24.8
NUP54-202ENST00000502850 ZNF18P17022 549 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 BTDP43251 543 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 ZNF174Q15697 407 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 ARMCX5Q6P1M9 558 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 FAM205AQ6ZU69 1335 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 PIK3AP1Q6ZUJ8 805 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 C16orf86Q6ZW13 317 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 TEX11Q8IYF3 940 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 ZNF784Q8NCA9 323 aaPredicted RBP13.61□□□□□ -0.23
NUP54-202ENST00000502850 TGFBRAP1Q8WUH2 860 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 PAGE5Q96GU1 130 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 CTAGE1Q96RT6 745 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 SYNRGQ9UMZ2 1314 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 JAG2Q9Y219 1238 aa13.61□□□□□ -0.23
NUP54-202ENST00000502850 C10orf71Q711Q0 1435 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 GAKO14976 1311 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 hCG_1642624A0A1W2PR95 340 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 VWA3AA6NCI4 1184 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 GOLGA6L9A6NEM1 432 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 FAM205CA6NFA0 338 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 hCG_1984214I3L0E3 225 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 FOXN1O15353 648 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 BMP6P22004 513 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 RBM10P98175 930 aaKnown RBP13.6□□□□□ -0.23
NUP54-202ENST00000502850 ORC2Q13416 577 aaPredicted RBP13.6□□□□□ -0.23
NUP54-202ENST00000502850 EARS2Q5JPH6 523 aaKnown RBP13.6□□□□□ -0.23
NUP54-202ENST00000502850 NLGN1Q8N2Q7 840 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 ZNF713Q8N859 430 aaPredicted RBP13.6□□□□□ -0.23
NUP54-202ENST00000502850 SPZ1Q9BXG8 430 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 IL17RBQ9NRM6 502 aa13.6□□□□□ -0.23
NUP54-202ENST00000502850 MYH8P13535 1937 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 PLIN4Q96Q06 1357 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 ZSCAN12O43309 604 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 GTPBP6O43824 516 aaPredicted RBP13.59□□□□□ -0.23
NUP54-202ENST00000502850 MYL1P05976 194 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 MMP10P09238 476 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 DPYDQ12882 1025 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 DIXDC1Q155Q3 683 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 SPATA1Q5VX52 437 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 SPECC1LQ69YQ0 1117 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 NEDD1Q8NHV4 660 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 EYA3Q99504 573 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 MAGEF1Q9HAY2 307 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 BARHL2Q9NY43 387 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 MAD2L2Q9UI95 211 aa13.59□□□□□ -0.23
NUP54-202ENST00000502850 SNED1Q8TER0 1413 aa13.58□□□□□ -0.23
NUP54-202ENST00000502850 FLT1P17948 1338 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 NRXN2Q9P2S2 1712 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 KLRG2A4D1S0 409 aaPredicted RBP13.58□□□□□ -0.24
NUP54-202ENST00000502850 PALM3A6NDB9 673 aaPredicted RBP13.58□□□□□ -0.24
NUP54-202ENST00000502850 ARHGAP6O43182 974 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 RASA1P20936 1047 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 SPAG1Q07617 926 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 FILIP1LQ4L180 1135 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 MFSD14BQ5SR56 506 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 MAPKAPK5Q8IW41 473 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 DYNLL2Q96FJ2 89 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 EPSTI1Q96J88 318 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 GTPBP4Q9BZE4 634 aaKnown RBP13.58□□□□□ -0.24
NUP54-202ENST00000502850 STX8Q9UNK0 236 aa13.58□□□□□ -0.24
NUP54-202ENST00000502850 PARP1P09874 1014 aaKnown RBP13.57□□□□□ -0.24
NUP54-202ENST00000502850 GNA11P29992 359 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms