RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 F13BP05160 661 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 ARNTP27540 789 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 RGS19P49795 217 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 CYP27A1Q02318 531 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 FSTL1Q12841 308 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 ZAR1Q86SH2 424 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 FRMD6Q96NE9 622 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 ACSS3Q9H6R3 686 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 C12orf49Q9H741 205 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 SSU72Q9NP77 194 aaKnown RBP5.91□□□□□ -1.46
USP54-217ENST00000498213 PICK1Q9NRD5 415 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 FAM8A1Q9UBU6 413 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 PPP1R9AQ9ULJ8 1098 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 SYNGAP1Q96PV0 1343 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 CROCC2H7BZ55 1655 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 NAIPQ13075 1403 aa5.91□□□□□ -1.46
USP54-217ENST00000498213 ZNF862O60290 1169 aa5.9□□□□□ -1.46
USP54-217ENST00000498213 USP17L7P0C7H9 530 aa5.9□□□□□ -1.46
USP54-217ENST00000498213 FOSL1P15407 271 aa5.9□□□□□ -1.46
USP54-217ENST00000498213 ZC3H6P61129 1189 aaKnown RBP5.9□□□□□ -1.46
USP54-217ENST00000498213 KIF4BQ2VIQ3 1234 aa5.9□□□□□ -1.46
USP54-217ENST00000498213 C3orf58Q8NDZ4 430 aa5.9□□□□□ -1.46
USP54-217ENST00000498213 WDR89Q96FK6 387 aaPredicted RBP5.9□□□□□ -1.46
USP54-217ENST00000498213 NECAB3Q96P71 396 aaPredicted RBP5.9□□□□□ -1.46
USP54-217ENST00000498213 OSBPL7Q9BZF2 842 aa5.9□□□□□ -1.46
USP54-217ENST00000498213 PRDM10Q9NQV6 1147 aa5.9□□□□□ -1.46
USP54-217ENST00000498213 STK26Q9P289 416 aa5.9□□□□□ -1.46
USP54-217ENST00000498213 TTF2Q9UNY4 1162 aaKnown RBP5.9□□□□□ -1.46
USP54-217ENST00000498213 SBNO1A3KN83 1393 aa5.9□□□□□ -1.47
USP54-217ENST00000498213 HFM1A2PYH4 1435 aa5.9□□□□□ -1.47
USP54-217ENST00000498213 COL14A1Q05707 1796 aaKnown RBP5.89□□□□□ -1.47
USP54-217ENST00000498213 ANKRD33BA6NCL7 494 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 CYP26A1O43174 497 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 PRPF40AO75400 957 aaKnown RBP5.89□□□□□ -1.47
USP54-217ENST00000498213 LMNB1P20700 586 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 EIF4BP23588 611 aaKnown RBP5.89□□□□□ -1.47
USP54-217ENST00000498213 LBX1P52954 281 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 LRRC14Q15048 493 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 MSMPQ1L6U9 139 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 EAPPQ56P03 285 aaPredicted RBP5.89□□□□□ -1.47
USP54-217ENST00000498213 FANCD2OSQ96PS1 177 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 LRRC4CQ9HCJ2 640 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 CRIM1Q9NZV1 1036 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 CCDC39Q9UFE4 941 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 KIAA0232Q92628 1395 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 OVOS2A0A0G2JMS6 1433 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 OVOS2A0A0J9YW53 1432 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 OVOS2Q6IE36 1432 aa5.89□□□□□ -1.47
USP54-217ENST00000498213 FAM170BA6NMN3 283 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 HCLS1P14317 486 aaPredicted RBP5.88□□□□□ -1.47
USP54-217ENST00000498213 GNA15P30679 374 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 ADMP35318 185 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 TTLL4Q14679 1199 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 OGFOD2Q6N063 350 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 LLGL2Q6P1M3 1020 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 PDZD3Q86UT5 571 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 TP53INP2Q8IXH6 220 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 SMYD4Q8IYR2 804 aaPredicted RBP5.88□□□□□ -1.47
USP54-217ENST00000498213 FBXL18Q96ME1 805 aa5.88□□□□□ -1.47
USP54-217ENST00000498213 GSX1Q9H4S2 264 aaPredicted RBP5.88□□□□□ -1.47
USP54-217ENST00000498213 ENC1O14682 589 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 PRNPP04156 253 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 CTCFP49711 727 aaPredicted RBP5.87□□□□□ -1.47
USP54-217ENST00000498213 DDB1Q16531 1140 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 CYP27C1Q4G0S4 372 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 ZNF765Q7L2R6 523 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 VSIG10LQ86VR7 867 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 SHISA5Q8N114 240 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 MARCH10Q8NA82 808 aaPredicted RBP5.87□□□□□ -1.47
USP54-217ENST00000498213 STK35Q8TDR2 534 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 GPBAR1Q8TDU6 330 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 PNPLA7Q6ZV29 1317 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 ROCK1Q13464 1354 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 DAPK1P53355 1430 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 CDC42BPGQ6DT37 1551 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 ABCA3Q99758 1704 aa5.87□□□□□ -1.47
USP54-217ENST00000498213 PDE4DIPQ5VU43 2346 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 SSH2Q76I76 1423 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 PLEKHH1Q9ULM0 1364 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 DYNC1LI2O43237 492 aaPredicted RBP5.86□□□□□ -1.47
USP54-217ENST00000498213 JAG1P78504 1218 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 CDK5R2Q13319 367 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 COL19A1Q14993 1142 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 ARHGAP27Q6ZUM4 889 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 CBLL1Q75N03 491 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 SMC1BQ8NDV3 1235 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 ELMO3Q96BJ8 720 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 ASIC4Q96FT7 647 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 DUSP9Q99956 384 aaKnown RBP5.86□□□□□ -1.47
USP54-217ENST00000498213 DISC1Q9NRI5 854 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 TFCP2L1Q9NZI6 479 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 PCOLCE2Q9UKZ9 415 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 PCDHA4Q9UN74 947 aa5.86□□□□□ -1.47
USP54-217ENST00000498213 ANKRD50Q9ULJ7 1429 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 IGSF1Q8N6C5 1336 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 PAGE1O75459 146 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 CELA3AP09093 270 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 FAM87AP0C7U9 286 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 ERVK-24P63145 666 aa5.85□□□□□ -1.47
USP54-217ENST00000498213 ZNF252P-AS1Q0IIN9 211 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms