RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 MRPL11Q9Y3B7 192 aaKnown RBP9.54□□□□□ -0.88
USP54-215ENST00000497106 RABGAP1Q9Y3P9 1069 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 IRS2Q9Y4H2 1338 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 NID2Q14112 1375 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 MAST2Q6P0Q8 1798 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 GMPSP49915 693 aaPredicted RBP9.54□□□□□ -0.88
USP54-215ENST00000497106 RBM10P98175 930 aaKnown RBP9.54□□□□□ -0.88
USP54-215ENST00000497106 CERS5Q8N5B7 392 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 C7orf43Q8WVR3 580 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 AMNQ9BXJ7 453 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 TNRC6CQ9HCJ0 1690 aaKnown RBP9.54□□□□□ -0.88
USP54-215ENST00000497106 SMCO2A6NFE2 343 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 PABPC4Q13310 644 aaKnown RBP eCLIP9.54□□□□□ -0.88
USP54-215ENST00000497106 GRPEL1Q9HAV7 217 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 RCOR1Q9UKL0 485 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 PPFIA3O75145 1194 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 AKR1B1P15121 316 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 CDC27P30260 824 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 UBA7P41226 1012 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 PKP1Q13835 747 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 SLC44A5Q8NCS7 719 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 MXD3Q9BW11 206 aa9.54□□□□□ -0.88
USP54-215ENST00000497106 SYCE3A1L190 88 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 WTIPA6NIX2 430 aaPredicted RBP9.53□□□□□ -0.88
USP54-215ENST00000497106 FBXO11Q86XK2 927 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 RMND1Q9NWS8 449 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 CLEC11AQ9Y240 323 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 IREB2P48200 963 aaKnown RBP9.53□□□□□ -0.88
USP54-215ENST00000497106 CCDC173Q0VFZ6 552 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 SYDE2Q5VT97 1194 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 DTHD1Q6ZMT9 781 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 PIK3AP1Q6ZUJ8 805 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 MCF2L2Q86YR7 1114 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 GPC2Q8N158 579 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 INCENPQ9NQS7 918 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 KCNJ14Q9UNX9 436 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 SLC39A14Q15043 492 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 CLSTN2Q9H4D0 955 aa9.53□□□□□ -0.88
USP54-215ENST00000497106 TNS1Q9HBL0 1735 aaKnown RBP9.52□□□□□ -0.88
USP54-215ENST00000497106 GH2P01242 217 aa9.52□□□□□ -0.88
USP54-215ENST00000497106 GCFC2P16383 781 aaKnown RBP9.52□□□□□ -0.88
USP54-215ENST00000497106 ZNF445P59923 1031 aa9.52□□□□□ -0.88
USP54-215ENST00000497106 OTUD7BQ6GQQ9 843 aa9.52□□□□□ -0.88
USP54-215ENST00000497106 NBPF3Q9H094 633 aa9.52□□□□□ -0.88
USP54-215ENST00000497106 FEM1BQ9UK73 627 aa9.52□□□□□ -0.88
USP54-215ENST00000497106 USP17L5A8MUK1 530 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 PLEKHA8P1O95397 391 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 STAT2P52630 851 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 TROAPQ12815 778 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 DACT1Q9NYF0 836 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 PLIN4Q96Q06 1357 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 FOXP2O15409 715 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 KIF20AO95235 890 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 GDF11O95390 407 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 CACNB3P54284 484 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 USP28Q96RU2 1077 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 FRMPD2Q68DX3 1309 aaPredicted RBP9.52□□□□□ -0.89
USP54-215ENST00000497106 TBC1D12O60347 775 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 CMA1P23946 247 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 AP3B2Q13367 1082 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 ARMC9Q7Z3E5 817 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 LPAR1Q92633 364 aa9.52□□□□□ -0.89
USP54-215ENST00000497106 TMEM232C9JQI7 657 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 ZBTB5O15062 677 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 EEF2P13639 858 aaKnown RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 MSNP26038 577 aaKnown RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 TBC1D10BQ4KMP7 808 aaPredicted RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 SMARCE1Q969G3 411 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 PRMT6Q96LA8 375 aaPredicted RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 TANGO6Q9C0B7 1094 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 COL2A1P02458 1487 aaPredicted RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 BTBD18B2RXH4 712 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 CBFA2T2O43439 604 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 CTDNEP1O95476 244 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 ZNF543Q08ER8 600 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 NEK8Q86SG6 692 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 GMCL1P1Q8NEA9 526 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 PSTPIP2Q9H939 334 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 ADARB2Q9NS39 739 aaKnown RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 BARHL2Q9NY43 387 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 ZDHHC9Q9Y397 364 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 MYH7P12883 1935 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 CNTNAP5Q8WYK1 1306 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 ESYT2A0FGR8 921 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 CTNND1O60716 968 aaKnown RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 TPM1P09493 284 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 HOXA7P31268 230 aaPredicted RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 PPP1R2P41236 205 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 RASA3Q14644 834 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 SEPT2Q15019 361 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 IQUBQ8NA54 791 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 HACL1Q9UJ83 578 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 ZBTB12Q9Y330 459 aaPredicted RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 NMT2O60551 498 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 U2AF2P26368 475 aaKnown RBP eCLIP9.51□□□□□ -0.89
USP54-215ENST00000497106 MARCKSP29966 332 aaPredicted RBP9.51□□□□□ -0.89
USP54-215ENST00000497106 GRIK5Q16478 980 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 USP17L2Q6R6M4 530 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 DAGLBQ8NCG7 672 aa9.51□□□□□ -0.89
USP54-215ENST00000497106 TIGD1Q96MW7 591 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms