RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 NOM1Q5C9Z4 860 aaKnown RBP12.59□□□□□ -0.39
CMSS1-208ENST00000496116 SLC27A3Q5K4L6 730 aa12.59□□□□□ -0.39
CMSS1-208ENST00000496116 USP17L1Q7RTZ2 530 aa12.59□□□□□ -0.39
CMSS1-208ENST00000496116 MAPKAPK5Q8IW41 473 aa12.59□□□□□ -0.39
CMSS1-208ENST00000496116 TSC1Q92574 1164 aa12.59□□□□□ -0.39
CMSS1-208ENST00000496116 GPR101Q96P66 508 aaPredicted RBP12.59□□□□□ -0.39
CMSS1-208ENST00000496116 PODXL2Q9NZ53 605 aa12.59□□□□□ -0.39
CMSS1-208ENST00000496116 AFF2P51816 1311 aa12.59□□□□□ -0.39
CMSS1-208ENST00000496116 DPYDQ12882 1025 aa12.58□□□□□ -0.4
CMSS1-208ENST00000496116 STAG2Q8N3U4 1231 aa12.58□□□□□ -0.4
CMSS1-208ENST00000496116 CCDC194A0A1B0GVG4 234 aa12.58□□□□□ -0.4
CMSS1-208ENST00000496116 RASA1P20936 1047 aa12.58□□□□□ -0.4
CMSS1-208ENST00000496116 HMGB2P26583 209 aaKnown RBP12.58□□□□□ -0.4
CMSS1-208ENST00000496116 LONP1P36776 959 aaKnown RBP12.58□□□□□ -0.4
CMSS1-208ENST00000496116 MFSD14BQ5SR56 506 aa12.58□□□□□ -0.4
CMSS1-208ENST00000496116 TEX11Q8IYF3 940 aa12.58□□□□□ -0.4
CMSS1-208ENST00000496116 TRMT44Q8IYL2 757 aaKnown RBP12.58□□□□□ -0.4
CMSS1-208ENST00000496116 ZNF710Q8N1W2 664 aa12.58□□□□□ -0.4
CMSS1-208ENST00000496116 GPKOWQ92917 476 aaPredicted RBP eCLIP12.58□□□□□ -0.4
CMSS1-208ENST00000496116 PPP1R13BQ96KQ4 1090 aa12.58□□□□□ -0.4
CMSS1-208ENST00000496116 CDK5RAP2Q96SN8 1893 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 SPATA1Q5VX52 437 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 SPECC1LQ69YQ0 1117 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 C16orf86Q6ZW13 317 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 TMC4Q7Z404 712 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 SLC51AQ86UW1 340 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 DAGLBQ8NCG7 672 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 FAM163AQ96GL9 167 aaPredicted RBP12.57□□□□□ -0.4
CMSS1-208ENST00000496116 EYA3Q99504 573 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 TMEM47Q9BQJ4 181 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 TMX1Q9H3N1 280 aa12.57□□□□□ -0.4
CMSS1-208ENST00000496116 SAP30BPQ9UHR5 308 aaKnown RBP12.57□□□□□ -0.4
CMSS1-208ENST00000496116 PALM3A6NDB9 673 aaPredicted RBP12.56□□□□□ -0.4
CMSS1-208ENST00000496116 TMEM232C9JQI7 657 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 VEGFAP15692 232 aaPredicted RBP12.56□□□□□ -0.4
CMSS1-208ENST00000496116 HOXA10P31260 410 aaPredicted RBP12.56□□□□□ -0.4
CMSS1-208ENST00000496116 CDK8P49336 464 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 E2F4Q16254 413 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 HSP90AA4PQ58FG1 418 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 FCHSD1Q86WN1 690 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 SLC44A5Q8NCS7 719 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 CCDC12Q8WUD4 166 aaPredicted RBP12.56□□□□□ -0.4
CMSS1-208ENST00000496116 CTAGE1Q96RT6 745 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 CRAMP1Q96RY5 1269 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 BARHL2Q9NY43 387 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 SYNRGQ9UMZ2 1314 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 ARHGAP6O43182 974 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 HEATR3Q7Z4Q2 680 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 TBC1D16Q8TBP0 767 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 ANKRD7Q92527 254 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 SAMSN1Q9NSI8 373 aaKnown RBP12.56□□□□□ -0.4
CMSS1-208ENST00000496116 INTS13Q9NVM9 706 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 RMND1Q9NWS8 449 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 FLT1P17948 1338 aa12.56□□□□□ -0.4
CMSS1-208ENST00000496116 C6orf229H3BNL8 230 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 M0R2N6 131 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 LAD1O00515 517 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 ZSCAN12O43309 604 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 GTPBP6O43824 516 aaPredicted RBP12.55□□□□□ -0.4
CMSS1-208ENST00000496116 TBX2Q13207 712 aaPredicted RBP12.55□□□□□ -0.4
CMSS1-208ENST00000496116 WWC2Q6AWC2 1192 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 KLHL10Q6JEL2 608 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 DTHD1Q6ZMT9 781 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 NEDD1Q8NHV4 660 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 SPZ1Q9BXG8 430 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 PCDHA6Q9UN73 950 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 PCDHA8Q9Y5H6 950 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 FAM205AQ6ZU69 1335 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 DDX60LQ5H9U9 1706 aaKnown RBP12.55□□□□□ -0.4
CMSS1-208ENST00000496116 MYH1P12882 1939 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 A0A1B0GTH6 734 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 KLRF2D3W0D1 207 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 GAKO14976 1311 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 CYTH3O43739 400 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 PARP1P09874 1014 aaKnown RBP12.55□□□□□ -0.4
CMSS1-208ENST00000496116 CUL4BQ13620 913 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 NR1I3Q14994 352 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 HOMER1Q86YM7 354 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 PDCL2Q8N4E4 241 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 POLLQ9UGP5 575 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 MTMR7Q9Y216 660 aa12.55□□□□□ -0.4
CMSS1-208ENST00000496116 STXBP3O00186 592 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 STX10O60499 249 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 SMARCA1P28370 1054 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 CASP1P29466 404 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 IL17AQ16552 155 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 FILIP1LQ4L180 1135 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 TYW1BQ6NUM6 668 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 PDXDC2PQ6P474 469 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 C4orf32Q8N8J7 132 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 UBE2Q2Q8WVN8 375 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 MED15Q96RN5 788 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 BAG1Q99933 345 aaPredicted RBP12.54□□□□□ -0.4
CMSS1-208ENST00000496116 SEC63Q9UGP8 760 aaKnown RBP12.54□□□□□ -0.4
CMSS1-208ENST00000496116 SNED1Q8TER0 1413 aa12.54□□□□□ -0.4
CMSS1-208ENST00000496116 KLRG2A4D1S0 409 aaPredicted RBP12.53□□□□□ -0.4
CMSS1-208ENST00000496116 PPP1R3GB7ZBB8 358 aa12.53□□□□□ -0.4
CMSS1-208ENST00000496116 POLRMTO00411 1230 aaKnown RBP12.53□□□□□ -0.4
CMSS1-208ENST00000496116 CD44P16070 742 aaKnown RBP12.53□□□□□ -0.4
CMSS1-208ENST00000496116 GNA11P29992 359 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms