RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 USP11P51784 963 aa9.15□□□□□ -0.94
VIM-207ENST00000495528 HDLBPQ00341 1268 aaKnown RBP9.15□□□□□ -0.94
VIM-207ENST00000495528 C2CD4AQ8NCU7 369 aaPredicted RBP9.15□□□□□ -0.94
VIM-207ENST00000495528 KCNF1Q9H3M0 494 aa9.15□□□□□ -0.94
VIM-207ENST00000495528 ACTL7BQ9Y614 415 aa9.15□□□□□ -0.94
VIM-207ENST00000495528 POLR3AO14802 1390 aaPredicted RBP9.14□□□□□ -0.95
VIM-207ENST00000495528 RAB6AP20340 208 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 ASPAP45381 313 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 CDK8P49336 464 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 INPP5AQ14642 412 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 SGO2Q562F6 1265 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 SNAP47Q5SQN1 464 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 BNC2Q6ZN30 1099 aaPredicted RBP9.14□□□□□ -0.95
VIM-207ENST00000495528 USP48Q86UV5 1035 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 C12orf40Q86WS4 652 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 TCP11L2Q8N4U5 519 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 ELMO3Q96BJ8 720 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 PICK1Q9NRD5 415 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 FAM105AQ9NUU6 356 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 CACNA2D2Q9NY47 1150 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 PCDHGC5Q9Y5F6 944 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 RGPD1P0DJD0 1748 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 CRYBG1Q9Y4K1 1723 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 SSH2Q76I76 1423 aa9.14□□□□□ -0.95
VIM-207ENST00000495528 GCP02774 474 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 LMNB2Q03252 620 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 ZC3H12AQ5D1E8 599 aaKnown RBP9.13□□□□□ -0.95
VIM-207ENST00000495528 CDPF1Q6NVV7 123 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.13□□□□□ -0.95
VIM-207ENST00000495528 TRIM42Q8IWZ5 723 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 GOLM1Q8NBJ4 401 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 RHOVQ96L33 236 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 MYRFLQ96LU7 910 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 FANCD2OSQ96PS1 177 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 CRIM1Q9NZV1 1036 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 CAMTA1Q9Y6Y1 1673 aa9.13□□□□□ -0.95
VIM-207ENST00000495528 PARD3Q8TEW0 1356 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 USP19O94966 1318 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 DHX15O43143 795 aaKnown RBP9.12□□□□□ -0.95
VIM-207ENST00000495528 EIF4A3P38919 411 aaKnown RBP9.12□□□□□ -0.95
VIM-207ENST00000495528 UVSSAQ2YD98 709 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 LRFN4Q6PJG9 635 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 METTL16Q86W50 562 aaKnown RBP9.12□□□□□ -0.95
VIM-207ENST00000495528 NT5DC4Q86YG4 428 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 FBLIM1Q8WUP2 373 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 PLPPR2Q96GM1 343 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 PIDD1Q9HB75 910 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 LGR6Q9HBX8 967 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 DISC1Q9NRI5 854 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 THRAP3Q9Y2W1 955 aaKnown RBP9.12□□□□□ -0.95
VIM-207ENST00000495528 CPDO75976 1380 aa9.12□□□□□ -0.95
VIM-207ENST00000495528 TNS1Q9HBL0 1735 aaKnown RBP9.11□□□□□ -0.95
VIM-207ENST00000495528 PRAMEF27A3QJZ7 478 aa9.11□□□□□ -0.95
VIM-207ENST00000495528 RNGTTO60942 597 aaKnown RBP9.11□□□□□ -0.95
VIM-207ENST00000495528 F13A1P00488 732 aa9.11□□□□□ -0.95
VIM-207ENST00000495528 IGHA1P01876 353 aa9.11□□□□□ -0.95
VIM-207ENST00000495528 HCLS1P14317 486 aaPredicted RBP9.11□□□□□ -0.95
VIM-207ENST00000495528 MAP4P27816 1152 aaKnown RBP9.11□□□□□ -0.95
VIM-207ENST00000495528 TTLL4Q14679 1199 aa9.11□□□□□ -0.95
VIM-207ENST00000495528 PPM1JQ5JR12 505 aa9.11□□□□□ -0.95
VIM-207ENST00000495528 WIPI1Q5MNZ9 446 aaPredicted RBP9.11□□□□□ -0.95
VIM-207ENST00000495528 FAM20CQ8IXL6 584 aa9.11□□□□□ -0.95
VIM-207ENST00000495528 ATXN3LQ9H3M9 355 aa9.11□□□□□ -0.95
VIM-207ENST00000495528 SYNGAP1Q96PV0 1343 aa9.1□□□□□ -0.95
VIM-207ENST00000495528 TLR3O15455 904 aaKnown RBP9.1□□□□□ -0.95
VIM-207ENST00000495528 FURINP09958 794 aa9.1□□□□□ -0.95
VIM-207ENST00000495528 TCF3P15923 654 aa9.1□□□□□ -0.95
VIM-207ENST00000495528 SCARA3Q6AZY7 606 aa9.1□□□□□ -0.95
VIM-207ENST00000495528 FBXL19Q6PCT2 694 aa9.1□□□□□ -0.95
VIM-207ENST00000495528 ZNF296Q8WUU4 475 aaPredicted RBP9.1□□□□□ -0.95
VIM-207ENST00000495528 ADAMTS1Q9UHI8 967 aa9.1□□□□□ -0.95
VIM-207ENST00000495528 HIF3AQ9Y2N7 669 aa9.1□□□□□ -0.95
VIM-207ENST00000495528 PHRF1Q9P1Y6 1649 aaKnown RBP9.09□□□□□ -0.95
VIM-207ENST00000495528 ARHGEF28Q8N1W1 1705 aaKnown RBP9.09□□□□□ -0.95
VIM-207ENST00000495528 KCNQ2O43526 872 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 NFICP08651 508 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 RACK1P63244 317 aaKnown RBP9.09□□□□□ -0.95
VIM-207ENST00000495528 NFKBIBQ15653 356 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 BEND4Q6ZU67 534 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 PTF1AQ7RTS3 328 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 HDXQ7Z353 690 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 FBXO27Q8NI29 283 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 SPON1Q9HCB6 807 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 STOML1Q9UBI4 398 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 DAGLAQ9Y4D2 1042 aa9.09□□□□□ -0.95
VIM-207ENST00000495528 NRKQ7Z2Y5 1582 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 PPIP5K1Q6PFW1 1433 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 HMX2A2RU54 273 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 PLSCR1O15162 318 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 BPNT1O95861 308 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 GARTP22102 1010 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 YY1P25490 414 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 ERVK-24P63145 666 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 RSPO4Q2I0M5 234 aaPredicted RBP9.08□□□□□ -0.96
VIM-207ENST00000495528 DIEXFQ68CQ4 756 aaKnown RBP9.08□□□□□ -0.96
VIM-207ENST00000495528 PRR23CQ6ZRP0 262 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 SPON2Q9BUD6 331 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 YIPF2Q9BWQ6 316 aa9.08□□□□□ -0.96
VIM-207ENST00000495528 SSU72Q9NP77 194 aaKnown RBP9.08□□□□□ -0.96
VIM-207ENST00000495528 PPP1R1BQ9UD71 204 aaPredicted RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms