RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 SHCBP1Q8NEM2 672 aa11.58□□□□□ -0.56
UBR4-216ENST00000494503 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.58□□□□□ -0.56
UBR4-216ENST00000494503 VCPKMTQ9H867 229 aa11.58□□□□□ -0.56
UBR4-216ENST00000494503 GOPCQ9HD26 462 aa11.58□□□□□ -0.56
UBR4-216ENST00000494503 ATP8A2Q9NTI2 1148 aa11.58□□□□□ -0.56
UBR4-216ENST00000494503 CTDP1Q9Y5B0 961 aaPredicted RBP11.58□□□□□ -0.56
UBR4-216ENST00000494503 LTBP2Q14767 1821 aa11.58□□□□□ -0.56
UBR4-216ENST00000494503 CHGBP05060 677 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 PGK2P07205 417 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 RARBP10826 455 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 EEF2P13639 858 aaKnown RBP11.57□□□□□ -0.56
UBR4-216ENST00000494503 FAM47AQ5JRC9 791 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 DIEXFQ68CQ4 756 aaKnown RBP11.57□□□□□ -0.56
UBR4-216ENST00000494503 SLC39A5Q6ZMH5 540 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 MAML3Q96JK9 1138 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 CCDC17Q96LX7 622 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 XPNPEP3Q9NQH7 507 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 FBXO28Q9NVF7 368 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 TMX2Q9Y320 296 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 ZBED9Q6R2W3 1325 aa11.57□□□□□ -0.56
UBR4-216ENST00000494503 SMIM22K7EJ46 135 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 SLC25A27O95847 323 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 TMEM132BQ14DG7 1078 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 LRRC41Q15345 812 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 FAM83BQ5T0W9 1011 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 C12orf60Q5U649 245 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 ZSCAN25Q6NSZ9 544 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 BADQ92934 168 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 CHMP4BQ9H444 224 aaKnown RBP11.56□□□□□ -0.56
UBR4-216ENST00000494503 KANSL2Q9H9L4 492 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 MYH4Q9Y623 1939 aa11.56□□□□□ -0.56
UBR4-216ENST00000494503 LAMA2P24043 3122 aaKnown RBP11.55□□□□□ -0.56
UBR4-216ENST00000494503 MINDY4BA8MYZ0 360 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 SMARCA5O60264 1052 aaPredicted RBP11.55□□□□□ -0.56
UBR4-216ENST00000494503 PQBP1O60828 265 aaKnown RBP11.55□□□□□ -0.56
UBR4-216ENST00000494503 PGK1P00558 417 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 ATP5JP18859 108 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 STAT3P40763 770 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 SHHQ15465 462 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 C16orf86Q6ZW13 317 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 RNF180Q86T96 592 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 ABRAQ8N0Z2 381 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 LENG1Q96BZ8 264 aaPredicted RBP11.55□□□□□ -0.56
UBR4-216ENST00000494503 NUP88Q99567 741 aaPredicted RBP11.55□□□□□ -0.56
UBR4-216ENST00000494503 HAUS7Q99871 368 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 LRRCC1Q9C099 1032 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 MKNK2Q9HBH9 465 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 CNPY2Q9Y2B0 182 aa11.55□□□□□ -0.56
UBR4-216ENST00000494503 VWA5AO00534 786 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 APPP05067 770 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 C9orf50Q5SZB4 431 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 SNRNP48Q6IEG0 339 aaKnown RBP11.54□□□□□ -0.56
UBR4-216ENST00000494503 CTR9Q6PD62 1173 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 SIAH1Q8IUQ4 282 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 SIRT2Q8IXJ6 389 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 CPXCR1Q8N123 301 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 DDX11Q96FC9 970 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 GPATCH3Q96I76 525 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 PUS7LQ9H0K6 701 aaKnown RBP11.54□□□□□ -0.56
UBR4-216ENST00000494503 PDLIM7Q9NR12 457 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 ZBTB40Q9NUA8 1239 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 ARPP21Q9UBL0 812 aaPredicted RBP11.54□□□□□ -0.56
UBR4-216ENST00000494503 ZHX1Q9UKY1 873 aaPredicted RBP11.54□□□□□ -0.56
UBR4-216ENST00000494503 PPP1R9AQ9ULJ8 1098 aa11.54□□□□□ -0.56
UBR4-216ENST00000494503 UNC80Q8N2C7 3258 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 AKR1A1P14550 325 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 RAG1P15918 1043 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 TDO2P48775 406 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 TLE2Q04725 743 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 UBE3CQ15386 1083 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 SH3RF1Q7Z6J0 888 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 RIOX2Q8IUF8 465 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.53□□□□□ -0.56
UBR4-216ENST00000494503 KIFC2Q96AC6 838 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 VTI1AQ96AJ9 217 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 CHMP4CQ96CF2 233 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 RNPC3Q96LT9 517 aaKnown RBP11.53□□□□□ -0.56
UBR4-216ENST00000494503 GUCD1Q96NT3 240 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 SLF1Q9BQI6 1058 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 TINF2Q9BSI4 451 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 MCM3APO60318 1980 aa11.53□□□□□ -0.56
UBR4-216ENST00000494503 CLTBP09497 229 aa11.52□□□□□ -0.57
UBR4-216ENST00000494503 TAL1P17542 331 aaPredicted RBP11.52□□□□□ -0.57
UBR4-216ENST00000494503 COPB2P35606 906 aa11.52□□□□□ -0.57
UBR4-216ENST00000494503 IKQ13123 557 aaPredicted RBP11.52□□□□□ -0.57
UBR4-216ENST00000494503 TSHZ3Q63HK5 1081 aa11.52□□□□□ -0.57
UBR4-216ENST00000494503 TEX13BQ9BXU2 312 aa11.52□□□□□ -0.57
UBR4-216ENST00000494503 STARD7Q9NQZ5 370 aa11.52□□□□□ -0.57
UBR4-216ENST00000494503 TMEM39AQ9NV64 488 aa11.52□□□□□ -0.57
UBR4-216ENST00000494503 RCAN3Q9UKA8 241 aa11.52□□□□□ -0.57
UBR4-216ENST00000494503 A0A1W2PQ45 241 aaPredicted RBP11.51□□□□□ -0.57
UBR4-216ENST00000494503 A0A1W2PQY0 241 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 TRIM43BA6NCK2 446 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 POTEB2H3BUK9 544 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 ZBED4O75132 1171 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 PRDM1O75626 825 aa11.51□□□□□ -0.57
UBR4-216ENST00000494503 FAM109BQ6ICB4 259 aaPredicted RBP11.51□□□□□ -0.57
UBR4-216ENST00000494503 ZNF444Q8N0Y2 327 aaPredicted RBP11.51□□□□□ -0.57
UBR4-216ENST00000494503 LRRC47Q8N1G4 583 aaKnown RBP11.51□□□□□ -0.57
UBR4-216ENST00000494503 ANKRD35Q8N283 1001 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms