RNA–Protein interactions for RNA: ENST00000493522.6

CTSA-209, Transcript of cathepsin A, humanhuman

TSL 2

Gene CTSA, Length 901 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-209ENST00000493522 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.68□□□□□ -0.22
CTSA-209ENST00000493522 PRO3102Q9H379 93 aa13.68□□□□□ -0.22
CTSA-209ENST00000493522 PAK6Q9NQU5 681 aaPredicted RBP13.68□□□□□ -0.22
CTSA-209ENST00000493522 A0A0C4DFX4 3053 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 IGKV6D-41A0A0C4DH26 115 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 A0A1W2PPC1 479 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 B4E1Z4 1266 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 RAD21O60216 631 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 REC8O95072 547 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 PABPC4Q13310 644 aaKnown RBP eCLIP13.67□□□□□ -0.22
CTSA-209ENST00000493522 SH3D19Q5HYK7 790 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 TREML2Q5T2D2 321 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 ESR2Q92731 530 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 KIAA1683Q9H0B3 1180 aa13.67□□□□□ -0.22
CTSA-209ENST00000493522 A0A1W2PRG0 241 aa13.66□□□□□ -0.22
CTSA-209ENST00000493522 KDM4AO75164 1064 aa13.66□□□□□ -0.22
CTSA-209ENST00000493522 GCLCP48506 637 aaPredicted RBP13.66□□□□□ -0.22
CTSA-209ENST00000493522 TRDNQ13061 729 aa13.66□□□□□ -0.22
CTSA-209ENST00000493522 RALYLQ86SE5 291 aaKnown RBP13.66□□□□□ -0.22
CTSA-209ENST00000493522 LRRC47Q8N1G4 583 aaKnown RBP13.66□□□□□ -0.22
CTSA-209ENST00000493522 KRT23Q9C075 422 aa13.66□□□□□ -0.22
CTSA-209ENST00000493522 CNNM2Q9H8M5 875 aa13.66□□□□□ -0.22
CTSA-209ENST00000493522 GOPCQ9HD26 462 aa13.66□□□□□ -0.22
CTSA-209ENST00000493522 NYAP2Q9P242 653 aa13.66□□□□□ -0.22
CTSA-209ENST00000493522 STX8Q9UNK0 236 aa13.66□□□□□ -0.22
CTSA-209ENST00000493522 SLC27A2O14975 620 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 NMT2O60551 498 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 TTLL1O95922 423 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 VCAM1P19320 739 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 PPP4R3BQ5MIZ7 849 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 RNF20Q5VTR2 975 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 CREB3L3Q68CJ9 461 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 C12orf42Q96LP6 360 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 CRISPLD2Q9H0B8 497 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 VCPKMTQ9H867 229 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 EMILIN3Q9NT22 766 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 MTMR4Q9NYA4 1195 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 TMX2Q9Y320 296 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 TAF6LQ9Y6J9 622 aa13.65□□□□□ -0.22
CTSA-209ENST00000493522 PLXNB2O15031 1838 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 E7EWF7 191 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 HMGCRP04035 888 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 IRX3P78415 501 aaPredicted RBP13.64□□□□□ -0.23
CTSA-209ENST00000493522 STOX1Q6ZVD7 989 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 NECAB2Q7Z6G3 386 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 SIAH1Q8IUQ4 282 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 SPICE1Q8N0Z3 855 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 ANKLE1Q8NAG6 615 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 PAWRQ96IZ0 340 aaKnown RBP13.64□□□□□ -0.23
CTSA-209ENST00000493522 ZKSCAN3Q9BRR0 538 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 TANGO6Q9C0B7 1094 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.64□□□□□ -0.23
CTSA-209ENST00000493522 IL17RBQ9NRM6 502 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 CLIP2Q9UDT6 1046 aa13.64□□□□□ -0.23
CTSA-209ENST00000493522 NT5C2P49902 561 aa13.63□□□□□ -0.23
CTSA-209ENST00000493522 NECTIN1Q15223 517 aa13.63□□□□□ -0.23
CTSA-209ENST00000493522 IQCA1Q86XH1 822 aa13.63□□□□□ -0.23
CTSA-209ENST00000493522 NCOA7Q8NI08 942 aa13.63□□□□□ -0.23
CTSA-209ENST00000493522 LPAR1Q92633 364 aa13.63□□□□□ -0.23
CTSA-209ENST00000493522 UBAC1Q9BSL1 405 aa13.63□□□□□ -0.23
CTSA-209ENST00000493522 ASCC2Q9H1I8 757 aaPredicted RBP13.63□□□□□ -0.23
CTSA-209ENST00000493522 RPAP3Q9H6T3 665 aaPredicted RBP13.63□□□□□ -0.23
CTSA-209ENST00000493522 ISY1Q9ULR0 285 aaKnown RBP13.63□□□□□ -0.23
CTSA-209ENST00000493522 USP17L15C9J2P7 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 USP17L13C9JLJ4 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 USP17L11C9JVI0 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 USP17L18D6R9N7 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 USP17L22D6RA61 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 USP17L17D6RBQ6 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 USP17L19D6RCP7 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 USP17L20D6RJB6 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 WDR46O15213 610 aaKnown RBP13.62□□□□□ -0.23
CTSA-209ENST00000493522 USP17L24Q0WX57 530 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 KIAA1755Q5JYT7 1200 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 HMX1Q9NP08 348 aaPredicted RBP13.62□□□□□ -0.23
CTSA-209ENST00000493522 TCP11L1Q9NUJ3 509 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 MTMR7Q9Y216 660 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 TNKSO95271 1327 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 RPTORQ8N122 1335 aa13.62□□□□□ -0.23
CTSA-209ENST00000493522 DOCK3Q8IZD9 2030 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 NDUFB10O96000 172 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 TOP1P11387 765 aaKnown RBP13.61□□□□□ -0.23
CTSA-209ENST00000493522 ZKSCAN1P17029 563 aaPredicted RBP13.61□□□□□ -0.23
CTSA-209ENST00000493522 HOXA7P31268 230 aaPredicted RBP13.61□□□□□ -0.23
CTSA-209ENST00000493522 CCDC178Q5BJE1 867 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 FAM83BQ5T0W9 1011 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 SAMD1Q6SPF0 538 aaPredicted RBP13.61□□□□□ -0.23
CTSA-209ENST00000493522 CYB5R4Q7L1T6 521 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 GMCL1P1Q8NEA9 526 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 DIS3LQ8TF46 1054 aaKnown RBP13.61□□□□□ -0.23
CTSA-209ENST00000493522 CHMP4CQ96CF2 233 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 ZSCAN10Q96SZ4 725 aaPredicted RBP13.61□□□□□ -0.23
CTSA-209ENST00000493522 NUP88Q99567 741 aaPredicted RBP13.61□□□□□ -0.23
CTSA-209ENST00000493522 ZSWIM5Q9P217 1185 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 SYNPO2Q9UMS6 1093 aa13.61□□□□□ -0.23
CTSA-209ENST00000493522 F5H6K3 240 aa13.6□□□□□ -0.23
CTSA-209ENST00000493522 MCCP23508 829 aa13.6□□□□□ -0.23
CTSA-209ENST00000493522 KLRC3Q07444 240 aa13.6□□□□□ -0.23
CTSA-209ENST00000493522 SLFN13Q68D06 897 aa13.6□□□□□ -0.23
CTSA-209ENST00000493522 MB21D2Q8IYB1 491 aaPredicted RBP13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms