RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 MOXD2PA6NHM9 499 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 TIMP1P01033 207 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 POLR3DP05423 398 aaPredicted RBP17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 PLA2G5P39877 138 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 KIAA1755Q5JYT7 1200 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 RASIP1Q5U651 963 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 NUP133Q8WUM0 1156 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 ASB2Q96Q27 587 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 SH2D4AQ9H788 454 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 TLR7Q9NYK1 1049 aaKnown RBP17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 TBX21Q9UL17 535 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 ADAMTS5Q9UNA0 930 aa17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 NOP58Q9Y2X3 529 aaKnown RBP17.3■□□□□ 0.36
PRPF40A-211ENST00000493468 MROH7Q68CQ1 1323 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 MPHOSPH10O00566 681 aaKnown RBP17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 WDR46O15213 610 aaKnown RBP17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 ZNF865P0CJ78 1059 aaPredicted RBP17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 ACLYP53396 1101 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 PPIGQ13427 754 aaKnown RBP eCLIP17.29■□□□□ 0.369e-10■■□□□ 11.4
PRPF40A-211ENST00000493468 TMEM132BQ14DG7 1078 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 ZNF792Q3KQV3 632 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 MFSD5Q6N075 450 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 MMP19Q99542 508 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.29■□□□□ 0.363e-14■□□□□ 11.2
PRPF40A-211ENST00000493468 STARD7Q9NQZ5 370 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 TMX2Q9Y320 296 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 GBF1Q92538 1859 aa17.29■□□□□ 0.36
PRPF40A-211ENST00000493468 SURF6O75683 361 aaKnown RBP17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 COPB2P35606 906 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 ATP8B2P98198 1209 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 KCTD2Q14681 263 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 RIOX2Q8IUF8 465 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 MSL3Q8N5Y2 521 aaKnown RBP17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 ADAMTS19Q8TE59 1207 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 PBX4Q9BYU1 374 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 CRNKL1Q9BZJ0 848 aaKnown RBP17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 VCPKMTQ9H867 229 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 ARHGEF10LQ9HCE6 1279 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 SWAP70Q9UH65 585 aa17.28■□□□□ 0.36
PRPF40A-211ENST00000493468 SYNRGQ9UMZ2 1314 aa17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 MAGEB6P1A0A0J9YX57 407 aa17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 TAL1P17542 331 aaPredicted RBP17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 MRPS5P82675 430 aaKnown RBP17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 TMEM240Q5SV17 173 aa17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 CCSAPQ6IQ19 270 aaPredicted RBP17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 KLHDC9Q8NEP7 349 aa17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 EAF2Q96CJ1 260 aaPredicted RBP17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 ANTXR1Q9H6X2 564 aa17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 MCM9Q9NXL9 1143 aa17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 CNPY2Q9Y2B0 182 aa17.27■□□□□ 0.36
PRPF40A-211ENST00000493468 ELP1O95163 1332 aa17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 CHD7Q9P2D1 2997 aa17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 PGK2P07205 417 aa17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 CST5P28325 142 aaPredicted RBP17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 ICA1Q05084 483 aa17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 PSRC1Q6PGN9 363 aaPredicted RBP17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 SIAH1Q8IUQ4 282 aa17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 UHRF1Q96T88 793 aaPredicted RBP17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 CCDC8Q9H0W5 538 aaPredicted RBP17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 PRDM12Q9H4Q4 367 aa17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 RAPGEFL1Q9UHV5 662 aa17.26■□□□□ 0.35
PRPF40A-211ENST00000493468 BAZ2AQ9UIF9 1905 aaKnown RBP17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 SYNGAP1Q96PV0 1343 aa17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 PBX2P40425 430 aa17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 CDK7P50613 346 aa17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 EVX2Q03828 476 aa17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 RAB30Q15771 203 aa17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 C16orf59Q7L2K0 433 aa17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 SPICE1Q8N0Z3 855 aa17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 LENG1Q96BZ8 264 aaPredicted RBP17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 FAM122AQ96E09 287 aa17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 ZNF214Q9UL59 606 aaPredicted RBP17.25■□□□□ 0.35
PRPF40A-211ENST00000493468 STAT3P40763 770 aa17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 TTF1Q15361 905 aaPredicted RBP17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 CCDC129Q6ZRS4 1044 aa17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 TMEM199Q8N511 208 aa17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 CCDC17Q96LX7 622 aa17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 GLT1D1Q96MS3 346 aa17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 DCP1AQ9NPI6 582 aaPredicted RBP17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 FAM184BQ9ULE4 1060 aa17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 TNNQ9UQP3 1299 aa17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 MCM3APO60318 1980 aa17.24■□□□□ 0.35
PRPF40A-211ENST00000493468 ZNF316A6NFI3 1004 aaPredicted RBP17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 VWA5AO00534 786 aa17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 DUSP11O75319 330 aaKnown RBP17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 PDE6AP16499 860 aa17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 ADGRE1Q14246 886 aa17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 KCNA10Q16322 511 aa17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 MAMDC4Q6UXC1 1216 aa17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 PCSK9Q8NBP7 692 aaKnown RBP17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 REPS2Q8NFH8 660 aa17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 PPM1EQ8WY54 764 aa17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 PPP1R9AQ9ULJ8 1098 aa17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 GREB1LQ9C091 1923 aaPredicted RBP17.23■□□□□ 0.35
PRPF40A-211ENST00000493468 REV3LO60673 3130 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 GRXCR1A8MXD5 290 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 BCAR3O75815 825 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 AKR1B1P15121 316 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 CSF2RAP15509 400 aa17.22■□□□□ 0.35
PRPF40A-211ENST00000493468 ZNF467Q7Z7K2 595 aaPredicted RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms