RNA–Protein interactions for RNA: ENST00000493348.1

TM4SF1-204, Transcript of transmembrane 4 L six family member 1, humanhuman

TSL 2

Gene TM4SF1, Length 976 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1-204ENST00000493348 WDR78Q5VTH9 848 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 SYNE3Q6ZMZ3 975 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 NFXL1Q6ZNB6 911 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 CATSPERGQ6ZRH7 1159 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 DGKHQ86XP1 1220 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 ANKRD13CQ8N6S4 541 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 MB21D1Q8N884 522 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 GMCL1P1Q8NEA9 526 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 CHURC1Q8WUH1 139 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 ZNF296Q8WUU4 475 aaPredicted RBP9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 MKL1Q969V6 931 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 UPF2Q9HAU5 1272 aaKnown RBP9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 ZSWIM5Q9P217 1185 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 TNKSO95271 1327 aa9.54□□□□□ -0.88
TM4SF1-204ENST00000493348 MGAMO43451 1857 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 CCDC69A6NI79 296 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 NMT2O60551 498 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 ZBED4O75132 1171 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 ECM2O94769 699 aaPredicted RBP9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 NDUFB10O96000 172 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 FCGRTP55899 365 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 FAM110CQ1W6H9 321 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 TMEM67Q5HYA8 995 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 CATIPQ7Z7H3 387 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 FAM160B2Q86V87 743 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 TMTC2Q8N394 836 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 GPRC5AQ8NFJ5 357 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 DCAF4Q8WV16 495 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 COA7Q96BR5 231 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 CHMP4CQ96CF2 233 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 NEK1Q96PY6 1258 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 P2RX7Q99572 595 aaKnown RBP9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 SLF1Q9BQI6 1058 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 TMEM47Q9BQJ4 181 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 NBPF3Q9H094 633 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 EFCC1Q9HA90 598 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 FEM1BQ9UK73 627 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 RABGAP1Q9Y3P9 1069 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 IVNS1ABPQ9Y6Y0 642 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 MYPNQ86TC9 1320 aa9.53□□□□□ -0.88
TM4SF1-204ENST00000493348 MYH6P13533 1939 aa9.52□□□□□ -0.88
TM4SF1-204ENST00000493348 TMEM232C9JQI7 657 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 TNPO2O14787 897 aaKnown RBP9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 PRC1O43663 620 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 DHX16O60231 1041 aaKnown RBP9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 GNRH1P01148 92 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 FDX1P10109 184 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 STAT2P52630 851 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 NECTIN1Q15223 517 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 C17orf99Q6UX52 265 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 CTU1Q7Z7A3 348 aaKnown RBP9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 PRPF38AQ8NAV1 312 aaKnown RBP9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 PNMA1Q8ND90 353 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 CD99L2Q8TCZ2 262 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 KIFC2Q96AC6 838 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 GMCL1Q96IK5 515 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 TMEM87BQ96K49 555 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 IL17RBQ9NRM6 502 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 NAP1L2Q9ULW6 460 aaPredicted RBP9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 TRIM17Q9Y577 477 aa9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 COL11A1P12107 1806 aaPredicted RBP9.52□□□□□ -0.89
TM4SF1-204ENST00000493348 PARP1P09874 1014 aaKnown RBP9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 MAPK4P31152 587 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 COPB2P35606 906 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 PSMC4P43686 418 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 SLC4A3P48751 1232 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 ERVK-9P63128 1117 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 ERVK-24P63145 666 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 LACTBP83111 547 aaPredicted RBP9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 PKN2Q16513 984 aaKnown RBP9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 GPATCH4Q5T3I0 446 aaKnown RBP9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 RCSD1Q6JBY9 416 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 BLOC1S2Q6QNY1 142 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 KCTD1Q719H9 257 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 CHST3Q7LGC8 479 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 SIAH1Q8IUQ4 282 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 ENAHQ8N8S7 591 aaPredicted RBP9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 JAKMIP1Q96N16 626 aaKnown RBP9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 NUP88Q99567 741 aaPredicted RBP9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 MTA3Q9BTC8 594 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 R3HDMLQ9H3Y0 253 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 PPP1R9AQ9ULJ8 1098 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 TACC3Q9Y6A5 838 aa9.51□□□□□ -0.89
TM4SF1-204ENST00000493348 PARP14Q460N5 1801 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 SPDYE16A6NNV3 312 aaPredicted RBP9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 SLC25A27O95847 323 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 CALM1P0DP23 149 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 CALM2P0DP24 149 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 CALM3P0DP25 149 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 BCRP11274 1271 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 KIF5BP33176 963 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 HSPA4P34932 840 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 PRMT2P55345 433 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 ASPRV1Q53RT3 343 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 LBX2Q6XYB7 198 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 CYB5R4Q7L1T6 521 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 CTCFLQ8NI51 663 aaPredicted RBP9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 RAET1EQ8TD07 263 aa9.5□□□□□ -0.89
TM4SF1-204ENST00000493348 NUP133Q8WUM0 1156 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms