RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 RRP1P56182 461 aaKnown RBP16.33■□□□□ 0.2
COL6A3-211ENST00000491233 TRPV1Q8NER1 839 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 OTUD7AQ8TE49 926 aaPredicted RBP16.33■□□□□ 0.2
COL6A3-211ENST00000491233 MROH8Q9H579 483 aa16.33■□□□□ 0.2
COL6A3-211ENST00000491233 MSCO60682 206 aa16.32■□□□□ 0.2
COL6A3-211ENST00000491233 IGHA2P01877 340 aa16.32■□□□□ 0.2
COL6A3-211ENST00000491233 TMEM132BQ14DG7 1078 aa16.32■□□□□ 0.2
COL6A3-211ENST00000491233 FAM83BQ5T0W9 1011 aa16.32■□□□□ 0.2
COL6A3-211ENST00000491233 OLFML2BQ68BL8 750 aa16.32■□□□□ 0.2
COL6A3-211ENST00000491233 PI4K2BQ8TCG2 481 aa16.32■□□□□ 0.2
COL6A3-211ENST00000491233 MKNK2Q9HBH9 465 aa16.32■□□□□ 0.2
COL6A3-211ENST00000491233 ERC2O15083 957 aa16.31■□□□□ 0.2
COL6A3-211ENST00000491233 COBLO75128 1261 aa16.31■□□□□ 0.2
COL6A3-211ENST00000491233 GNAT2P19087 354 aa16.31■□□□□ 0.2
COL6A3-211ENST00000491233 LRRFIP1Q32MZ4 808 aaKnown RBP16.31■□□□□ 0.2
COL6A3-211ENST00000491233 ABRAQ8N0Z2 381 aa16.31■□□□□ 0.2
COL6A3-211ENST00000491233 GDF15Q99988 308 aa16.31■□□□□ 0.2
COL6A3-211ENST00000491233 FSD1Q9BTV5 496 aa16.31■□□□□ 0.2
COL6A3-211ENST00000491233 PPP1R9AQ9ULJ8 1098 aa16.31■□□□□ 0.2
COL6A3-211ENST00000491233 ADAMTS5Q9UNA0 930 aa16.31■□□□□ 0.2
COL6A3-211ENST00000491233 APPP05067 770 aa16.3■□□□□ 0.2
COL6A3-211ENST00000491233 LRRC26Q2I0M4 334 aa16.3■□□□□ 0.2
COL6A3-211ENST00000491233 SEC62Q99442 399 aaKnown RBP16.3■□□□□ 0.2
COL6A3-211ENST00000491233 NUP88Q99567 741 aaPredicted RBP16.3■□□□□ 0.2
COL6A3-211ENST00000491233 SLC5A4Q9NY91 659 aa16.3■□□□□ 0.2
COL6A3-211ENST00000491233 LTBP2Q14767 1821 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 VWA5AO00534 786 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 PRDM1O75626 825 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 SLC25A27O95847 323 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 NDUFB10O96000 172 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 FCER1AP12319 257 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 MX1P20591 662 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 ANO1Q5XXA6 986 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 RIOX2Q8IUF8 465 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 MAML3Q96JK9 1138 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 CRBNQ96SW2 442 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 MMP19Q99542 508 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 NYAP2Q9P242 653 aa16.29■□□□□ 0.2
COL6A3-211ENST00000491233 ZNF214Q9UL59 606 aaPredicted RBP16.29■□□□□ 0.2
COL6A3-211ENST00000491233 PLIN4Q96Q06 1357 aa16.28■□□□□ 0.2
COL6A3-211ENST00000491233 SALL3Q9BXA9 1300 aa16.28■□□□□ 0.2
COL6A3-211ENST00000491233 IGKV6D-41A0A0C4DH26 115 aa16.28■□□□□ 0.2
COL6A3-211ENST00000491233 DNM1LO00429 736 aa16.28■□□□□ 0.2
COL6A3-211ENST00000491233 SOX1O00570 391 aaPredicted RBP16.28■□□□□ 0.2
COL6A3-211ENST00000491233 BMP8BP34820 402 aa16.28■□□□□ 0.2
COL6A3-211ENST00000491233 MAGEA10P43363 369 aaPredicted RBP16.28■□□□□ 0.2
COL6A3-211ENST00000491233 IFNL3Q8IZI9 196 aa16.28■□□□□ 0.2
COL6A3-211ENST00000491233 REPS2Q8NFH8 660 aa16.28■□□□□ 0.2
COL6A3-211ENST00000491233 SLF1Q9BQI6 1058 aa16.28■□□□□ 0.2
COL6A3-211ENST00000491233 SENP6Q9GZR1 1112 aaPredicted RBP16.28■□□□□ 0.2
COL6A3-211ENST00000491233 PATL2C9JE40 543 aaKnown RBP16.27■□□□□ 0.2
COL6A3-211ENST00000491233 F5H6K3 240 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 SEPT4O43236 478 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 COPB2P35606 906 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 STAT3P40763 770 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 KLRC3Q07444 240 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 KCTD2Q14681 263 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 ZMYM1Q5SVZ6 1142 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 PRAMEF19Q5SWL8 479 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 NACAP1Q9BZK3 213 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 NAPBQ9H115 298 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 ZNF287Q9HBT7 754 aa16.27■□□□□ 0.2
COL6A3-211ENST00000491233 SMCHD1A6NHR9 2005 aa16.26■□□□□ 0.19
COL6A3-211ENST00000491233 PGK2P07205 417 aa16.26■□□□□ 0.19
COL6A3-211ENST00000491233 GJC2Q5T442 439 aaPredicted RBP16.26■□□□□ 0.19
COL6A3-211ENST00000491233 ZNF444Q8N0Y2 327 aaPredicted RBP16.26■□□□□ 0.19
COL6A3-211ENST00000491233 LRRC47Q8N1G4 583 aaKnown RBP16.26■□□□□ 0.19
COL6A3-211ENST00000491233 CEP95Q96GE4 821 aa16.26■□□□□ 0.19
COL6A3-211ENST00000491233 LRCH3Q96II8 777 aa16.26■□□□□ 0.19
COL6A3-211ENST00000491233 CLIP2Q9UDT6 1046 aa16.26■□□□□ 0.19
COL6A3-211ENST00000491233 ZBTB47Q9UFB7 747 aaPredicted RBP16.26■□□□□ 0.19
COL6A3-211ENST00000491233 ATN1P54259 1190 aaPredicted RBP16.25■□□□□ 0.19
COL6A3-211ENST00000491233 PPARAQ07869 468 aa16.25■□□□□ 0.19
COL6A3-211ENST00000491233 SNRNP48Q6IEG0 339 aaKnown RBP16.25■□□□□ 0.19
COL6A3-211ENST00000491233 CCDC129Q6ZRS4 1044 aa16.25■□□□□ 0.19
COL6A3-211ENST00000491233 ARRDC4Q8NCT1 418 aa16.25■□□□□ 0.19
COL6A3-211ENST00000491233 TEX13BQ9BXU2 312 aa16.25■□□□□ 0.19
COL6A3-211ENST00000491233 MCM3APO60318 1980 aa16.25■□□□□ 0.19
COL6A3-211ENST00000491233 RANBP2P49792 3224 aaKnown RBP16.25■□□□□ 0.19
COL6A3-211ENST00000491233 KBTBD13C9JR72 458 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 TTLL1O95922 423 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 MYCNP04198 464 aaPredicted RBP16.24■□□□□ 0.19
COL6A3-211ENST00000491233 SLC3A2P08195 630 aaKnown RBP16.24■□□□□ 0.19
COL6A3-211ENST00000491233 TSPY3P0CV98 308 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 TSPY8P0CW00 308 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 PDE4BQ07343 736 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 ZNF792Q3KQV3 632 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 FAM47AQ5JRC9 791 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 ANKRD45Q5TZF3 282 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 NEDD1Q8NHV4 660 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 UBE2OQ9C0C9 1292 aaKnown RBP16.24■□□□□ 0.19
COL6A3-211ENST00000491233 MTMR4Q9NYA4 1195 aa16.24■□□□□ 0.19
COL6A3-211ENST00000491233 FOXP2O15409 715 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 RTP1P59025 263 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 MDM2Q00987 491 aaPredicted RBP16.23■□□□□ 0.19
COL6A3-211ENST00000491233 TDHQ8IZJ6 230 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 CPXCR1Q8N123 301 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 PRPF38AQ8NAV1 312 aaKnown RBP16.23■□□□□ 0.19
COL6A3-211ENST00000491233 GMCL1P1Q8NEA9 526 aa16.23■□□□□ 0.19
COL6A3-211ENST00000491233 MKL1Q969V6 931 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms