RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 CCDC17Q96LX7 622 aa11.85□□□□□ -0.51
HDAC3-210ENST00000490808 ZNF408Q9H9D4 720 aa11.85□□□□□ -0.51
HDAC3-210ENST00000490808 SAP30BPQ9UHR5 308 aaKnown RBP11.85□□□□□ -0.51
HDAC3-210ENST00000490808 TACC3Q9Y6A5 838 aa11.85□□□□□ -0.51
HDAC3-210ENST00000490808 TNRC18O15417 2968 aaPredicted RBP11.85□□□□□ -0.51
HDAC3-210ENST00000490808 DDX60LQ5H9U9 1706 aaKnown RBP11.84□□□□□ -0.51
HDAC3-210ENST00000490808 CYP2D6P10635 497 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 ZNF445P59923 1031 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 PICALMQ13492 652 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 FAM47AQ5JRC9 791 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 CCDC183Q5T5S1 534 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 KRT40Q6A162 431 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 RGMBQ6NW40 437 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 CCDC144CPQ8IYA2 1237 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 SERPINB13Q9UIV8 391 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 ZNF112Q9UJU3 913 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 CSADQ9Y600 493 aa11.84□□□□□ -0.51
HDAC3-210ENST00000490808 YEATS4O95619 227 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 ZBTB48P10074 688 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-210ENST00000490808 RXRAP19793 462 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 RASA1P20936 1047 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 FOSBP53539 338 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 CACNB3P54284 484 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 MAP3K9P80192 1104 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 TCP10Q12799 353 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 NOGQ13253 232 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 SF3A1Q15459 793 aaKnown RBP11.83□□□□□ -0.52
HDAC3-210ENST00000490808 NOL9Q5SY16 702 aaKnown RBP11.83□□□□□ -0.52
HDAC3-210ENST00000490808 RAB11FIP4Q86YS3 637 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 PNMA1Q8ND90 353 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 GPT2Q8TD30 523 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 KCNG4Q8TDN1 519 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 PHKBQ93100 1093 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 MYL10Q9BUA6 226 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 FOXP1Q9H334 677 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-210ENST00000490808 SENP2Q9HC62 589 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 GDPD2Q9HCC8 539 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 DDX4Q9NQI0 724 aaKnown RBP11.83□□□□□ -0.52
HDAC3-210ENST00000490808 FAM217BQ9NTX9 383 aaPredicted RBP11.83□□□□□ -0.52
HDAC3-210ENST00000490808 RTEL1Q9NZ71 1219 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 TFIP11Q9UBB9 837 aaKnown RBP11.83□□□□□ -0.52
HDAC3-210ENST00000490808 RCOR1Q9UKL0 485 aa11.83□□□□□ -0.52
HDAC3-210ENST00000490808 OTOFQ9HC10 1997 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 CTNND1O60716 968 aaKnown RBP11.82□□□□□ -0.52
HDAC3-210ENST00000490808 USP2O75604 605 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-210ENST00000490808 TOP1P11387 765 aaKnown RBP11.82□□□□□ -0.52
HDAC3-210ENST00000490808 SMARCA1P28370 1054 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 PLCD1P51178 756 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 SOX10P56693 466 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 INHBEP58166 350 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 GUCY1B3Q02153 619 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 TROAPQ12815 778 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 ZSCAN23Q3MJ62 389 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.82□□□□□ -0.52
HDAC3-210ENST00000490808 LEO1Q8WVC0 666 aaPredicted RBP11.82□□□□□ -0.52
HDAC3-210ENST00000490808 DYNLL2Q96FJ2 89 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 POLR3EQ9NVU0 708 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 CEP131Q9UPN4 1083 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 SSC5DA1L4H1 1573 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 DOCK1Q14185 1865 aa11.82□□□□□ -0.52
HDAC3-210ENST00000490808 DDTLA6NHG4 134 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-210ENST00000490808 MMP1P03956 469 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 U2AF2P26368 475 aaKnown RBP eCLIP11.81□□□□□ -0.52
HDAC3-210ENST00000490808 CALML3P27482 149 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 ZNF157P51786 506 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-210ENST00000490808 KIF23Q02241 960 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-210ENST00000490808 STK38Q15208 465 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 MYSM1Q5VVJ2 828 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 LRSAM1Q6UWE0 723 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 TMTC3Q6ZXV5 915 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 NBPF11Q86T75 865 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 BICD2Q8TD16 824 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 CCDC12Q8WUD4 166 aaPredicted RBP11.81□□□□□ -0.52
HDAC3-210ENST00000490808 SLC10A4Q96EP9 437 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 WRNIP1Q96S55 665 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.81□□□□□ -0.52
HDAC3-210ENST00000490808 SH3GLB2Q9NR46 395 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 DDX19AQ9NUU7 478 aaKnown RBP11.81□□□□□ -0.52
HDAC3-210ENST00000490808 STX8Q9UNK0 236 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 ATAD5Q96QE3 1844 aa11.81□□□□□ -0.52
HDAC3-210ENST00000490808 PLIN4Q96Q06 1357 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 CTAGE5O15320 804 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 BMP15O95972 392 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 ASNSP08243 561 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 SLC10A3P09131 477 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 PPATQ06203 517 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 GRM4Q14833 912 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 RILPL1Q5EBL4 403 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 PRAMEF18Q5VWM3 479 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 CCDC73Q6ZRK6 1079 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 SH3BP5LQ7L8J4 393 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 ERO1BQ86YB8 467 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 NOL7Q9UMY1 257 aaKnown RBP11.8□□□□□ -0.52
HDAC3-210ENST00000490808 SIPA1L1O43166 1804 aa11.8□□□□□ -0.52
HDAC3-210ENST00000490808 FSD2A1L4K1 749 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 GADD45BO75293 160 aaPredicted RBP11.79□□□□□ -0.52
HDAC3-210ENST00000490808 TTLL1O95922 423 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 PARP1P09874 1014 aaKnown RBP11.79□□□□□ -0.52
HDAC3-210ENST00000490808 KRT2P35908 639 aa11.79□□□□□ -0.52
HDAC3-210ENST00000490808 ME1P48163 572 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms