RNA–Protein interactions for RNA: ENST00000486159.5

TMEM39A-208, Transcript of transmembrane protein 39A, human

TSL 3

Gene TMEM39A, Length 826 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM39A-208	ENST00000486159	CTR9	Q6PD62	1173 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	LBX2	Q6XYB7	198 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	CERS3	Q8IU89	383 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	ANKLE1	Q8NAG6	615 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	ATG4C	Q96DT6	458 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	GDF15	Q99988	308 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	TANGO6	Q9C0B7	1094 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	CWC22	Q9HCG8	908 aa	Known RBP	11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	FBXO28	Q9NVF7	368 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	SLC4A4	Q9Y6R1	1079 aa		11.22	□□□□□ -0.61
TMEM39A-208	ENST00000486159	COL11A1	P12107	1806 aa	Predicted RBP	11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	PARP14	Q460N5	1801 aa		11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	SLC15A5	A6NIM6	579 aa		11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	IGHA2	P01877	340 aa		11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	CD44	P16070	742 aa	Known RBP	11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	ERCC3	P19447	782 aa		11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	MAGEA10	P43363	369 aa	Predicted RBP	11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	ATP2B2	Q01814	1243 aa		11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	GRB14	Q14449	540 aa		11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	COG2	Q14746	738 aa		11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	TTC22	Q5TAA0	569 aa		11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.21	□□□□□ -0.61
TMEM39A-208	ENST00000486159	DNAH12	Q6ZR08	3092 aa		11.21	□□□□□ -0.62
TMEM39A-208	ENST00000486159		A0A0G2JMZ2	1700 aa		11.21	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CEP290	O15078	2479 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	ZNFX1	Q9P2E3	1918 aa	Known RBP	11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CDC45	O75419	566 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	EEF2	P13639	858 aa	Known RBP	11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	ADORA2A	P29274	412 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CNGA1	P29973	690 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	ATN1	P54259	1190 aa	Predicted RBP	11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	ICA1	Q05084	483 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	PLS1	Q14651	629 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CASC1	Q6TDU7	716 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	TMEM179	Q6ZVK1	233 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	OSBP2	Q969R2	916 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	TBC1D32	Q96NH3	1257 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	SENP6	Q9GZR1	1112 aa	Predicted RBP	11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	SPATC1L	Q9H0A9	340 aa		11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159	DAXX	Q9UER7	740 aa	Predicted RBP	11.2	□□□□□ -0.62
TMEM39A-208	ENST00000486159		M0R2C6	588 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	FLOT1	O75955	427 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	HOXC6	P09630	235 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CCNA1	P78396	465 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	MDM2	Q00987	491 aa	Predicted RBP	11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	TMEM132B	Q14DG7	1078 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	UBE3C	Q15386	1083 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	GJC2	Q5T442	439 aa	Predicted RBP	11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	C16orf86	Q6ZW13	317 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159		Q7L0L9	218 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	STRBP	Q96SI9	672 aa	Known RBP	11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	SEC62	Q99442	399 aa	Known RBP	11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	NUP88	Q99567	741 aa	Predicted RBP	11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	VCPKMT	Q9H867	229 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	ATP8A2	Q9NTI2	1148 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	SWAP70	Q9UH65	585 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	DDX20	Q9UHI6	824 aa	Known RBP	11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	TMX2	Q9Y320	296 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	LAMA3	Q16787	3333 aa		11.19	□□□□□ -0.62
TMEM39A-208	ENST00000486159	GSG1L2	A8MUP6	293 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	RAD21	O60216	631 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	PGK2	P07205	417 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CYBA	P13498	195 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	PDE1A	P54750	535 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	BECN1	Q14457	450 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	MFSD14C	Q5VZR4	134 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	TMED8	Q6PL24	325 aa	Predicted RBP	11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	DPP9	Q86TI2	863 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	NCAPG2	Q86XI2	1143 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	TRMT44	Q8IYL2	757 aa	Known RBP	11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CHMP4C	Q96CF2	233 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	HOXC10	Q9NYD6	342 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	IVNS1ABP	Q9Y6Y0	642 aa		11.18	□□□□□ -0.62
TMEM39A-208	ENST00000486159	SALL3	Q9BXA9	1300 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	MINDY4B	A8MYZ0	360 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	HAX1	O00165	279 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	PRDM1	O75626	825 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	TAL1	P17542	331 aa	Predicted RBP	11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	MX1	P20591	662 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	RASA1	P20936	1047 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	BMP8B	P34820	402 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	FAM83B	Q5T0W9	1011 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	ARHGEF10L	Q9HCE6	1279 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	ECHDC1	Q9NTX5	307 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	SMCHD1	A6NHR9	2005 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CACNA1A	O00555	2505 aa		11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	GREB1L	Q9C091	1923 aa	Predicted RBP	11.17	□□□□□ -0.62
TMEM39A-208	ENST00000486159	GLRX3	O76003	335 aa	Known RBP	11.16	□□□□□ -0.62
TMEM39A-208	ENST00000486159	SEC24B	O95487	1268 aa		11.16	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CHRM1	P11229	460 aa	Predicted RBP	11.16	□□□□□ -0.62
TMEM39A-208	ENST00000486159	CAPN2	P17655	700 aa		11.16	□□□□□ -0.62
TMEM39A-208	ENST00000486159	RBM25	P49756	843 aa	Known RBP	11.16	□□□□□ -0.62
TMEM39A-208	ENST00000486159	KBTBD3	Q8NAB2	608 aa		11.16	□□□□□ -0.62
TMEM39A-208	ENST00000486159	REPS2	Q8NFH8	660 aa		11.16	□□□□□ -0.62

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