RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.5□□□□□ -0.89
USP40-216ENST00000485943 BIN2Q9UBW5 565 aaPredicted RBP9.5□□□□□ -0.89
USP40-216ENST00000485943 STX8Q9UNK0 236 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 LHX6Q9UPM6 363 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 MTMR7Q9Y216 660 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 AFG3L2Q9Y4W6 797 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 TRIM17Q9Y577 477 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 ADGRG1Q9Y653 693 aa9.5□□□□□ -0.89
USP40-216ENST00000485943 EIF5BO60841 1220 aaKnown RBP9.49□□□□□ -0.89
USP40-216ENST00000485943 HSPD1P10809 573 aaKnown RBP9.49□□□□□ -0.89
USP40-216ENST00000485943 SHMT1P34896 483 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 HAND2P61296 217 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 CCNA1P78396 465 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 MAP3K10Q02779 954 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 CTDSPL2Q05D32 466 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 PKN2Q16513 984 aaKnown RBP9.49□□□□□ -0.89
USP40-216ENST00000485943 RNF20Q5VTR2 975 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 CTU1Q7Z7A3 348 aaKnown RBP9.49□□□□□ -0.89
USP40-216ENST00000485943 METTL3Q86U44 580 aaKnown RBP9.49□□□□□ -0.89
USP40-216ENST00000485943 IQCA1Q86XH1 822 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 ZNF296Q8WUU4 475 aaPredicted RBP9.49□□□□□ -0.89
USP40-216ENST00000485943 ESR2Q92731 530 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 PAGR1Q9BTK6 254 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 WDR18Q9BV38 432 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 CNNM2Q9H8M5 875 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 EFCC1Q9HA90 598 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 ANO2Q9NQ90 1003 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 CPA4Q9UI42 421 aa9.49□□□□□ -0.89
USP40-216ENST00000485943 USP17L15C9J2P7 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 USP17L13C9JLJ4 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 USP17L11C9JVI0 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 USP17L18D6R9N7 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 USP17L22D6RA61 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 USP17L17D6RBQ6 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 USP17L19D6RCP7 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 USP17L20D6RJB6 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 TLR2O60603 784 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 CDC45O75419 566 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 CYP2C8P10632 490 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 PCP11498 1178 aaKnown RBP9.48□□□□□ -0.89
USP40-216ENST00000485943 AKR1B1P15121 316 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 GCLCP48506 637 aaPredicted RBP9.48□□□□□ -0.89
USP40-216ENST00000485943 SLC4A3P48751 1232 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 FCGRTP55899 365 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 MDM2Q00987 491 aaPredicted RBP9.48□□□□□ -0.89
USP40-216ENST00000485943 TFAP4Q01664 338 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 USP17L24Q0WX57 530 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 PLS1Q14651 629 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 SART3Q15020 963 aaKnown RBP9.48□□□□□ -0.89
USP40-216ENST00000485943 CCDC178Q5BJE1 867 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 NBPF11Q86T75 865 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 ZNF710Q8N1W2 664 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 ANKRD13CQ8N6S4 541 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 RAET1EQ8TD07 263 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 COA7Q96BR5 231 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 UBAC1Q9BSL1 405 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 KRT23Q9C075 422 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 DNAJC18Q9H819 358 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 CLIP2Q9UDT6 1046 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 SLC45A1Q9Y2W3 748 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 IVNS1ABPQ9Y6Y0 642 aa9.48□□□□□ -0.89
USP40-216ENST00000485943 MYH4Q9Y623 1939 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 CCDC85CA6NKD9 419 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 TNPO2O14787 897 aaKnown RBP9.47□□□□□ -0.89
USP40-216ENST00000485943 FLOT1O75955 427 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 TTLL1O95922 423 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 FGAP02671 866 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 CLCN1P35523 988 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 FGD1P98174 961 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 CCDC96Q2M329 555 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 FAM47AQ5JRC9 791 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 VPS53Q5VIR6 699 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 ZNF589Q86UQ0 364 aaPredicted RBP9.47□□□□□ -0.89
USP40-216ENST00000485943 METTL16Q86W50 562 aaKnown RBP9.47□□□□□ -0.89
USP40-216ENST00000485943 SPICE1Q8N0Z3 855 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 CD99L2Q8TCZ2 262 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 PXYLP1Q8TE99 480 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 LPAR1Q92633 364 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 DSCC1Q9BVC3 393 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 KIAA1683Q9H0B3 1180 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 RPAP3Q9H6T3 665 aaPredicted RBP9.47□□□□□ -0.89
USP40-216ENST00000485943 EPB41L4AQ9HCS5 686 aaPredicted RBP9.47□□□□□ -0.89
USP40-216ENST00000485943 GPCPD1Q9NPB8 672 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 HOXC10Q9NYD6 342 aa9.47□□□□□ -0.89
USP40-216ENST00000485943 DHX16O60231 1041 aaKnown RBP9.46□□□□□ -0.9
USP40-216ENST00000485943 GNRH1P01148 92 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 EEF2P13639 858 aaKnown RBP9.46□□□□□ -0.9
USP40-216ENST00000485943 GSPT1P15170 499 aaKnown RBP9.46□□□□□ -0.9
USP40-216ENST00000485943 COL9A1P20849 921 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 MCCP23508 829 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 CHMLP26374 656 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 PSMC4P43686 418 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 PRSS12P56730 875 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 GABPAQ06546 454 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 ALX1Q15699 326 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 BMP2KLQ5H9B9 411 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 AKNAD1Q5T1N1 836 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 TREML2Q5T2D2 321 aa9.46□□□□□ -0.9
USP40-216ENST00000485943 COL13A1Q5TAT6 717 aaPredicted RBP9.46□□□□□ -0.9
USP40-216ENST00000485943 GPRC5AQ8NFJ5 357 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms