RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 ARHGAP39Q9C0H5 1083 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 KAT14Q9H8E8 782 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 A0A0G2JMZ2 1700 aa13.92□□□□□ -0.18
HPS4-214ENST00000485842 MGAMO43451 1857 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 IFIT3O14879 490 aaKnown RBP13.91□□□□□ -0.18
HPS4-214ENST00000485842 DSG3P32926 999 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 ANTXR2P58335 489 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 LACTBP83111 547 aaPredicted RBP13.91□□□□□ -0.18
HPS4-214ENST00000485842 IKQ13123 557 aaPredicted RBP13.91□□□□□ -0.18
HPS4-214ENST00000485842 IFIT1BQ5T764 474 aaKnown RBP13.91□□□□□ -0.18
HPS4-214ENST00000485842 KCTD1Q719H9 257 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 CTU1Q7Z7A3 348 aaKnown RBP13.91□□□□□ -0.18
HPS4-214ENST00000485842 DGKHQ86XP1 1220 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 RASEFQ8IZ41 740 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 GMCL1Q96IK5 515 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 TTC14Q96N46 770 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 TXNRD2Q9NNW7 524 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 RBPJLQ9UBG7 517 aa13.91□□□□□ -0.18
HPS4-214ENST00000485842 FRMPD2Q68DX3 1309 aaPredicted RBP13.9□□□□□ -0.18
HPS4-214ENST00000485842 COL11A1P12107 1806 aaPredicted RBP13.9□□□□□ -0.18
HPS4-214ENST00000485842 ERICH2A1L162 156 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 TMEM232C9JQI7 657 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 PRC1O43663 620 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 FMNL1O95466 1100 aaPredicted RBP13.9□□□□□ -0.18
HPS4-214ENST00000485842 HSPA4P34932 840 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 PSMC4P43686 418 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 ERVK-9P63128 1117 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 ERVK-24P63145 666 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 CAP1Q01518 475 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 SART3Q15020 963 aaKnown RBP13.9□□□□□ -0.18
HPS4-214ENST00000485842 TMEM67Q5HYA8 995 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 PNMA1Q8ND90 353 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 GPRC5AQ8NFJ5 357 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 DCAF4Q8WV16 495 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 SLF1Q9BQI6 1058 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 EFCC1Q9HA90 598 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 HOXC10Q9NYD6 342 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 MORF4L1Q9UBU8 362 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 PPP1R9AQ9ULJ8 1098 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 RABGAP1Q9Y3P9 1069 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 TRIM17Q9Y577 477 aa13.9□□□□□ -0.18
HPS4-214ENST00000485842 MYPNQ86TC9 1320 aa13.9□□□□□ -0.19
HPS4-214ENST00000485842 CNMDO75829 334 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 CTGFP29279 349 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 MCM5P33992 734 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 FCGRTP55899 365 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 COL9A3Q14050 684 aaPredicted RBP13.89□□□□□ -0.19
HPS4-214ENST00000485842 KRT32Q14532 448 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 PLS1Q14651 629 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 WTAPQ15007 396 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 ARHGEF6Q15052 776 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 SEC23AQ15436 765 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 ADCK5Q3MIX3 580 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 POTEEQ6S8J3 1075 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 LBX2Q6XYB7 198 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 OTOP1Q7RTM1 612 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 KIFC2Q96AC6 838 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 TRIM47Q96LD4 638 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 NEK1Q96PY6 1258 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 GPCPD1Q9NPB8 672 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 BTBD7Q9P203 1132 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 FEM1BQ9UK73 627 aa13.89□□□□□ -0.19
HPS4-214ENST00000485842 TNPO2O14787 897 aaKnown RBP13.88□□□□□ -0.19
HPS4-214ENST00000485842 PDHBP11177 359 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 STAT2P52630 851 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 Q3C1V9 767 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 WDR78Q5VTH9 848 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 CCAR1Q8IX12 1150 aaKnown RBP13.88□□□□□ -0.19
HPS4-214ENST00000485842 ANKS1AQ92625 1134 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 JAKMIP1Q96N16 626 aaKnown RBP13.88□□□□□ -0.19
HPS4-214ENST00000485842 USP26Q9BXU7 913 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 LRRC2Q9BYS8 371 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 SENP2Q9HC62 589 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 CWC22Q9HCG8 908 aaKnown RBP13.88□□□□□ -0.19
HPS4-214ENST00000485842 CTDP1Q9Y5B0 961 aaPredicted RBP13.88□□□□□ -0.19
HPS4-214ENST00000485842 SNX14Q9Y5W7 946 aa13.88□□□□□ -0.19
HPS4-214ENST00000485842 VWA5AO00534 786 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 EPB41L2O43491 1005 aaKnown RBP13.87□□□□□ -0.19
HPS4-214ENST00000485842 GOLGA8HP0CJ92 632 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 CCNA1P78396 465 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 TSGA10IPQ3SY00 556 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 TTBK2Q6IQ55 1244 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 FAM160B2Q86V87 743 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 MB21D1Q8N884 522 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 PRPF38AQ8NAV1 312 aaKnown RBP13.87□□□□□ -0.19
HPS4-214ENST00000485842 CHURC1Q8WUH1 139 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 KCNB2Q92953 911 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 TCEANC2Q96MN5 208 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 MCOLN1Q9GZU1 580 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 PORCNQ9H237 461 aa13.87□□□□□ -0.19
HPS4-214ENST00000485842 GPHNQ9NQX3 736 aaPredicted RBP13.87□□□□□ -0.19
HPS4-214ENST00000485842 SH2B2O14492 632 aaPredicted RBP13.86□□□□□ -0.19
HPS4-214ENST00000485842 ZBED4O75132 1171 aa13.86□□□□□ -0.19
HPS4-214ENST00000485842 SNHG28P0DPA3 235 aa13.86□□□□□ -0.19
HPS4-214ENST00000485842 CPA1P15085 419 aa13.86□□□□□ -0.19
HPS4-214ENST00000485842 SLC16A2P36021 539 aa13.86□□□□□ -0.19
HPS4-214ENST00000485842 SLC4A3P48751 1232 aa13.86□□□□□ -0.19
HPS4-214ENST00000485842 ZNF543Q08ER8 600 aa13.86□□□□□ -0.19
HPS4-214ENST00000485842 C8orf34Q49A92 452 aa13.86□□□□□ -0.19
HPS4-214ENST00000485842 NFXL1Q6ZNB6 911 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms