RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 FERMT2Q96AC1 680 aa16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 PDLIM7Q9NR12 457 aa16.71■□□□□ 0.27
SQSTM1-208ENST00000485412 ADCYAP1R1P41586 468 aa16.7■□□□□ 0.26
SQSTM1-208ENST00000485412 SMAD3P84022 425 aaKnown RBP16.7■□□□□ 0.26
SQSTM1-208ENST00000485412 ICA1Q05084 483 aa16.7■□□□□ 0.26
SQSTM1-208ENST00000485412 SNX17Q15036 470 aa16.7■□□□□ 0.26
SQSTM1-208ENST00000485412 PRAMEF19Q5SWL8 479 aa16.7■□□□□ 0.26
SQSTM1-208ENST00000485412 NCAPG2Q86XI2 1143 aa16.7■□□□□ 0.26
SQSTM1-208ENST00000485412 FBXO28Q9NVF7 368 aa16.7■□□□□ 0.26
SQSTM1-208ENST00000485412 MYH4Q9Y623 1939 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 USP17L12C9JPN9 530 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 USP17L21D6R901 530 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 FLOT1O75955 427 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 FOSL2P15408 326 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 ATP5JP18859 108 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 DSG3P32926 999 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 CDK8P49336 464 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 LRRC41Q15345 812 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 C12orf60Q5U649 245 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 SH3RF1Q7Z6J0 888 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 MB21D1Q8N884 522 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 HAUS7Q99871 368 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 MROH8Q9H579 483 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 VCPKMTQ9H867 229 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 DDX19BQ9UMR2 479 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 TMX2Q9Y320 296 aa16.69■□□□□ 0.26
SQSTM1-208ENST00000485412 RAB11FIP3O75154 756 aa16.68■□□□□ 0.26
SQSTM1-208ENST00000485412 HMMRO75330 724 aa16.68■□□□□ 0.26
SQSTM1-208ENST00000485412 TMEM132BQ14DG7 1078 aa16.68■□□□□ 0.26
SQSTM1-208ENST00000485412 FAM47AQ5JRC9 791 aa16.68■□□□□ 0.26
SQSTM1-208ENST00000485412 PUS7LQ9H0K6 701 aaKnown RBP16.68■□□□□ 0.26
SQSTM1-208ENST00000485412 TTYH1Q9H313 450 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-208ENST00000485412 SWAP70Q9UH65 585 aa16.68■□□□□ 0.26
SQSTM1-208ENST00000485412 TRIM43BA6NCK2 446 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 EEF2P13639 858 aaKnown RBP16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 TLE2Q04725 743 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 C1orf53Q5VUE5 145 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 C16orf86Q6ZW13 317 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 ABRAQ8N0Z2 381 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 TRIM43Q96BQ3 446 aaPredicted RBP16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 MAML3Q96JK9 1138 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 RNPC3Q96LT9 517 aaKnown RBP16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 ARHGEF10LQ9HCE6 1279 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 ATP8A2Q9NTI2 1148 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 MCM3APO60318 1980 aa16.67■□□□□ 0.26
SQSTM1-208ENST00000485412 RARBP10826 455 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 FCER1AP12319 257 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 VCANP13611 3396 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 TSHZ3Q63HK5 1081 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 CTR9Q6PD62 1173 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 STK11IPQ8N1F8 1099 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 SH2D4AQ9H788 454 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 XPNPEP3Q9NQH7 507 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 TACC3Q9Y6A5 838 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 SLC4A4Q9Y6R1 1079 aa16.66■□□□□ 0.26
SQSTM1-208ENST00000485412 PGK2P07205 417 aa16.65■□□□□ 0.26
SQSTM1-208ENST00000485412 CLTBP09497 229 aa16.65■□□□□ 0.26
SQSTM1-208ENST00000485412 UBE3CQ15386 1083 aa16.65■□□□□ 0.26
SQSTM1-208ENST00000485412 RNF180Q86T96 592 aa16.65■□□□□ 0.26
SQSTM1-208ENST00000485412 SYMPKQ92797 1274 aaKnown RBP16.65■□□□□ 0.26
SQSTM1-208ENST00000485412 NUP88Q99567 741 aaPredicted RBP16.65■□□□□ 0.26
SQSTM1-208ENST00000485412 PHF24Q9UPV7 400 aa16.65■□□□□ 0.26
SQSTM1-208ENST00000485412 TMEM265A0A087WTH1 108 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 WDR46O15213 610 aaKnown RBP16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 SLC25A27O95847 323 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 MS4A1P11836 297 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 RAG1P15918 1043 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 TAL1P17542 331 aaPredicted RBP16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 FAM83BQ5T0W9 1011 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 REPS2Q8NFH8 660 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 LENG1Q96BZ8 264 aaPredicted RBP16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 MMP19Q99542 508 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 PRDM6Q9NQX0 595 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 NRBP1Q9UHY1 535 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 RCAN3Q9UKA8 241 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 ADAMTS5Q9UNA0 930 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 PRUNE2Q8WUY3 3088 aa16.64■□□□□ 0.25
SQSTM1-208ENST00000485412 PQBP1O60828 265 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-208ENST00000485412 PGK1P00558 417 aa16.63■□□□□ 0.25
SQSTM1-208ENST00000485412 CCDC17Q96LX7 622 aa16.63■□□□□ 0.25
SQSTM1-208ENST00000485412 LRRCC1Q9C099 1032 aa16.63■□□□□ 0.25
SQSTM1-208ENST00000485412 SPTBN5Q9NRC6 3674 aaKnown RBP16.63■□□□□ 0.25
SQSTM1-208ENST00000485412 A0A1W2PQ45 241 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 A0A1W2PQY0 241 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 KIAA0355O15063 1070 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 RAD21O60216 631 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 ITGB8P26012 769 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 FPGSQ05932 587 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 KCTD2Q14681 263 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 OSBP2Q969R2 916 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 STRBPQ96SI9 672 aaKnown RBP16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 TINF2Q9BSI4 451 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 EPB41L4AQ9HCS5 686 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 TMEM39AQ9NV64 488 aa16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 ZNF214Q9UL59 606 aaPredicted RBP16.62■□□□□ 0.25
SQSTM1-208ENST00000485412 GSG1L2A8MUP6 293 aa16.61■□□□□ 0.25
SQSTM1-208ENST00000485412 VWA5AO00534 786 aa16.61■□□□□ 0.25
SQSTM1-208ENST00000485412 RASA1P20936 1047 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms