RNA–Protein interactions for RNA: ENST00000484305.1

HDAC1-209, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-209ENST00000484305 FBXO28Q9NVF7 368 aa15.33■□□□□ 0.04
HDAC1-209ENST00000484305 PLIN4Q96Q06 1357 aa15.33■□□□□ 0.04
HDAC1-209ENST00000484305 F5H6K3 240 aa15.32■□□□□ 0.04
HDAC1-209ENST00000484305 TTLL1O95922 423 aa15.32■□□□□ 0.04
HDAC1-209ENST00000484305 XRCC5P13010 732 aaKnown RBP15.32■□□□□ 0.04
HDAC1-209ENST00000484305 GJA8P48165 433 aa15.32■□□□□ 0.04
HDAC1-209ENST00000484305 KLRC3Q07444 240 aa15.32■□□□□ 0.04
HDAC1-209ENST00000484305 CWC27Q6UX04 472 aaKnown RBP15.32■□□□□ 0.04
HDAC1-209ENST00000484305 MB21D1Q8N884 522 aa15.32■□□□□ 0.04
HDAC1-209ENST00000484305 SPATC1LQ9H0A9 340 aa15.32■□□□□ 0.04
HDAC1-209ENST00000484305 ADAMTS5Q9UNA0 930 aa15.32■□□□□ 0.04
HDAC1-209ENST00000484305 ZNFX1Q9P2E3 1918 aaKnown RBP15.31■□□□□ 0.04
HDAC1-209ENST00000484305 SLC15A5A6NIM6 579 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 NDUFB10O96000 172 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 GSPT1P15170 499 aaKnown RBP15.31■□□□□ 0.04
HDAC1-209ENST00000484305 PTPREP23469 700 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 RGS2P41220 211 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 MAP2K5Q13163 448 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 PLS1Q14651 629 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 CCL14Q16627 93 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 TTC22Q5TAA0 569 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 NKX2-3Q8TAU0 364 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 U2AF1L4Q8WU68 220 aaKnown RBP15.31■□□□□ 0.04
HDAC1-209ENST00000484305 IL17RBQ9NRM6 502 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 DIAPH3Q9NSV4 1193 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 ZMYM6O95789 1325 aa15.31■□□□□ 0.04
HDAC1-209ENST00000484305 TSPY2A6NKD2 308 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 ORC4O43929 436 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 NMT2O60551 498 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 FGRP09769 529 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 ERCC3P19447 782 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 MFAP1P55081 439 aaKnown RBP15.3■□□□□ 0.04
HDAC1-209ENST00000484305 TMEM132BQ14DG7 1078 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 LRRC47Q8N1G4 583 aaKnown RBP15.3■□□□□ 0.04
HDAC1-209ENST00000484305 DEFB118Q96PH6 123 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 APBA2Q99767 749 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 PAK6Q9NQU5 681 aaPredicted RBP15.3■□□□□ 0.04
HDAC1-209ENST00000484305 PPP1R9AQ9ULJ8 1098 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 IVNS1ABPQ9Y6Y0 642 aa15.3■□□□□ 0.04
HDAC1-209ENST00000484305 RPTORQ8N122 1335 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 HIP1O00291 1037 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 VWA5AO00534 786 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 RANBP6O60518 1105 aaKnown RBP15.29■□□□□ 0.04
HDAC1-209ENST00000484305 SGPL1O95470 568 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 ZKSCAN1P17029 563 aaPredicted RBP15.29■□□□□ 0.04
HDAC1-209ENST00000484305 HAND2P61296 217 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 GRB14Q14449 540 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 GMCL1P1Q8NEA9 526 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 SHCBP1Q8NEM2 672 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 SLF1Q9BQI6 1058 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 NBPF3Q9H094 633 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.29■□□□□ 0.04
HDAC1-209ENST00000484305 TOMM22Q9NS69 142 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 FLRT1Q9NZU1 646 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 SYNPO2Q9UMS6 1093 aa15.29■□□□□ 0.04
HDAC1-209ENST00000484305 PRKAR2AP13861 404 aaKnown RBP15.28■□□□□ 0.04
HDAC1-209ENST00000484305 MAP3K21Q5TCX8 1036 aa15.28■□□□□ 0.04
HDAC1-209ENST00000484305 NCAPG2Q86XI2 1143 aa15.28■□□□□ 0.04
HDAC1-209ENST00000484305 TRMT44Q8IYL2 757 aaKnown RBP15.28■□□□□ 0.04
HDAC1-209ENST00000484305 REPS2Q8NFH8 660 aa15.28■□□□□ 0.04
HDAC1-209ENST00000484305 NPLOC4Q8TAT6 608 aa15.28■□□□□ 0.04
HDAC1-209ENST00000484305 IL25Q9H293 177 aa15.28■□□□□ 0.04
HDAC1-209ENST00000484305 HMX1Q9NP08 348 aaPredicted RBP15.28■□□□□ 0.04
HDAC1-209ENST00000484305 LAMA4Q16363 1823 aa15.28■□□□□ 0.04
HDAC1-209ENST00000484305 ZNF236Q9UL36 1845 aa15.28■□□□□ 0.04
HDAC1-209ENST00000484305 STRNO43815 780 aa15.27■□□□□ 0.04
HDAC1-209ENST00000484305 TFRCP02786 760 aaKnown RBP15.27■□□□□ 0.04
HDAC1-209ENST00000484305 HOXC6P09630 235 aa15.27■□□□□ 0.04
HDAC1-209ENST00000484305 ADORA2AP29274 412 aa15.27■□□□□ 0.04
HDAC1-209ENST00000484305 CACNB2Q08289 660 aaPredicted RBP15.27■□□□□ 0.04
HDAC1-209ENST00000484305 RRP12Q5JTH9 1297 aaKnown RBP15.27■□□□□ 0.04
HDAC1-209ENST00000484305 SLFN13Q68D06 897 aa15.27■□□□□ 0.04
HDAC1-209ENST00000484305 TBC1D10CQ8IV04 446 aa15.27■□□□□ 0.04
HDAC1-209ENST00000484305 PRPF38AQ8NAV1 312 aaKnown RBP15.27■□□□□ 0.04
HDAC1-209ENST00000484305 CHMP4CQ96CF2 233 aa15.27■□□□□ 0.04
HDAC1-209ENST00000484305 MROH8Q9H579 483 aa15.27■□□□□ 0.04
HDAC1-209ENST00000484305 ZNF214Q9UL59 606 aaPredicted RBP15.27■□□□□ 0.04
HDAC1-209ENST00000484305 STX8Q9UNK0 236 aa15.27■□□□□ 0.04
HDAC1-209ENST00000484305 SLC25A27O95847 323 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 STAT3P40763 770 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 AKNAD1Q5T1N1 836 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 MFSD6Q6ZSS7 791 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 UBE2Q1Q7Z7E8 422 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 DPP9Q86TI2 863 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 RIOX2Q8IUF8 465 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 STAG1Q8WVM7 1258 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 CRISPLD2Q9H0B8 497 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 FEM1BQ9UK73 627 aa15.26■□□□□ 0.03
HDAC1-209ENST00000484305 PLXNA1Q9UIW2 1896 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 ZNF213O14771 459 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 COBLO75128 1261 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 BMP3P12645 472 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 MCCP23508 829 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 CCND3P30281 292 aaPredicted RBP15.25■□□□□ 0.03
HDAC1-209ENST00000484305 NOVP48745 357 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 PPP4R3BQ5MIZ7 849 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 KIFC2Q96AC6 838 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 DSCC1Q9BVC3 393 aa15.25■□□□□ 0.03
HDAC1-209ENST00000484305 NEDD4P46934 1319 aa15.24■□□□□ 0.03
HDAC1-209ENST00000484305 TMEM232C9JQI7 657 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms