RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 SMARCC2Q8TAQ2 1214 aa16.24■□□□□ 0.19
SMAD9-204ENST00000483941 NKX2-3Q8TAU0 364 aa16.24■□□□□ 0.19
SMAD9-204ENST00000483941 ERO1AQ96HE7 468 aa16.24■□□□□ 0.19
SMAD9-204ENST00000483941 FOXD4L1Q9NU39 408 aa16.24■□□□□ 0.19
SMAD9-204ENST00000483941 CLIP2Q9UDT6 1046 aa16.24■□□□□ 0.19
SMAD9-204ENST00000483941 SSC5DA1L4H1 1573 aa16.24■□□□□ 0.19
SMAD9-204ENST00000483941 CEP290O15078 2479 aa16.24■□□□□ 0.19
SMAD9-204ENST00000483941 PPP1R12BO60237 982 aaPredicted RBP16.23■□□□□ 0.19
SMAD9-204ENST00000483941 GH2P01242 217 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 ZBTB48P10074 688 aaPredicted RBP16.23■□□□□ 0.19
SMAD9-204ENST00000483941 IFNAR1P17181 557 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 SMARCA1P28370 1054 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 GJB2P29033 226 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 CAP2P40123 477 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 SSRP1Q08945 709 aaKnown RBP16.23■□□□□ 0.19
SMAD9-204ENST00000483941 RAB3GAP1Q15042 981 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.23■□□□□ 0.19
SMAD9-204ENST00000483941 SENP2Q9HC62 589 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 FZD1Q9UP38 647 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 PTPN22Q9Y2R2 807 aa16.23■□□□□ 0.19
SMAD9-204ENST00000483941 PTPDC1A2A3K4 754 aa16.22■□□□□ 0.19
SMAD9-204ENST00000483941 FAM196BA6NMK8 535 aa16.22■□□□□ 0.19
SMAD9-204ENST00000483941 IGF2BP3O00425 579 aaKnown RBP eCLIP16.22■□□□□ 0.19
SMAD9-204ENST00000483941 PARP1P09874 1014 aaKnown RBP16.22■□□□□ 0.19
SMAD9-204ENST00000483941 NBPF12Q5TAG4 269 aaPredicted RBP16.22■□□□□ 0.19
SMAD9-204ENST00000483941 NSUN7Q8NE18 718 aaKnown RBP16.22■□□□□ 0.19
SMAD9-204ENST00000483941 CD99L2Q8TCZ2 262 aa16.22■□□□□ 0.19
SMAD9-204ENST00000483941 ARMC5Q96C12 935 aa16.22■□□□□ 0.19
SMAD9-204ENST00000483941 SLC10A4Q96EP9 437 aa16.22■□□□□ 0.19
SMAD9-204ENST00000483941 WNK4Q96J92 1243 aa16.22■□□□□ 0.19
SMAD9-204ENST00000483941 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.22■□□□□ 0.19
SMAD9-204ENST00000483941 ZBTB21Q9ULJ3 1066 aa16.22■□□□□ 0.19
SMAD9-204ENST00000483941 STK36Q9NRP7 1315 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 RANBP2P49792 3224 aaKnown RBP16.21■□□□□ 0.19
SMAD9-204ENST00000483941 GDF11O95390 407 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 XBP1P17861 261 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 EN2P19622 333 aaPredicted RBP16.21■□□□□ 0.19
SMAD9-204ENST00000483941 ADD1P35611 737 aaKnown RBP16.21■□□□□ 0.19
SMAD9-204ENST00000483941 DDIT3P35638 169 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 ATP2B2Q01814 1243 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 GRM4Q14833 912 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 SEPT2Q15019 361 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 ASPRV1Q53RT3 343 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 GPATCH4Q5T3I0 446 aaKnown RBP16.21■□□□□ 0.19
SMAD9-204ENST00000483941 LARP1BQ659C4 914 aaKnown RBP16.21■□□□□ 0.19
SMAD9-204ENST00000483941 AS3MTQ9HBK9 375 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 NCOA5Q9HCD5 579 aaKnown RBP16.21■□□□□ 0.19
SMAD9-204ENST00000483941 GOPCQ9HD26 462 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 PICK1Q9NRD5 415 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 ZNF112Q9UJU3 913 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 TRIOBPQ9H2D6 2365 aa16.21■□□□□ 0.19
SMAD9-204ENST00000483941 PHF20L1A8MW92 1017 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 EEF2P13639 858 aaKnown RBP16.2■□□□□ 0.18
SMAD9-204ENST00000483941 ST3GAL1Q11201 340 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 CRHR2Q13324 411 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 MAP3K11Q16584 847 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 CCDC144CPQ8IYA2 1237 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 GMCL1P1Q8NEA9 526 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 DCAF4Q8WV16 495 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 CLMNQ96JQ2 1002 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 MYL10Q9BUA6 226 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 RNF26Q9BY78 433 aaPredicted RBP16.2■□□□□ 0.18
SMAD9-204ENST00000483941 EFCC1Q9HA90 598 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 ORC3Q9UBD5 711 aaPredicted RBP16.2■□□□□ 0.18
SMAD9-204ENST00000483941 ATP6V1DQ9Y5K8 247 aa16.2■□□□□ 0.18
SMAD9-204ENST00000483941 H3BQV1 296 aa16.19■□□□□ 0.18
SMAD9-204ENST00000483941 FMNL1O95466 1100 aaPredicted RBP16.19■□□□□ 0.18
SMAD9-204ENST00000483941 RXRAP19793 462 aa16.19■□□□□ 0.18
SMAD9-204ENST00000483941 IREB2P48200 963 aaKnown RBP16.19■□□□□ 0.18
SMAD9-204ENST00000483941 TRIM29Q14134 588 aa16.19■□□□□ 0.18
SMAD9-204ENST00000483941 TMTC3Q6ZXV5 915 aa16.19■□□□□ 0.18
SMAD9-204ENST00000483941 SCYL3Q8IZE3 742 aa16.19■□□□□ 0.18
SMAD9-204ENST00000483941 FAM177A1Q8N128 213 aaPredicted RBP16.19■□□□□ 0.18
SMAD9-204ENST00000483941 MYH8P13535 1937 aa16.19■□□□□ 0.18
SMAD9-204ENST00000483941 PALM3A6NDB9 673 aaPredicted RBP16.18■□□□□ 0.18
SMAD9-204ENST00000483941 UNCXA6NJT0 531 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 USP17L5A8MUK1 530 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 STX6O43752 255 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 DEXIO95424 95 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 CTDNEP1O95476 244 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 CDC27P30260 824 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 NTRK3Q16288 839 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 OTUD7BQ6GQQ9 843 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 DDX11Q96FC9 970 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 WRNIP1Q96S55 665 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 TMEM106CQ9BVX2 250 aa16.18■□□□□ 0.18
SMAD9-204ENST00000483941 FAM217BQ9NTX9 383 aaPredicted RBP16.18■□□□□ 0.18
SMAD9-204ENST00000483941 COLQQ9Y215 455 aaPredicted RBP16.18■□□□□ 0.18
SMAD9-204ENST00000483941 PRPF3O43395 683 aaKnown RBP16.17■□□□□ 0.18
SMAD9-204ENST00000483941 JAK2O60674 1132 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 SNHG28P0DPA3 235 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 PDHBP11177 359 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 SYT1P21579 422 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 GUCY1A2P33402 732 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 SLC1A4P43007 532 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 USP14P54578 494 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 MAP3K9P80192 1104 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 SP3Q02447 781 aa16.17■□□□□ 0.18
SMAD9-204ENST00000483941 NOL9Q5SY16 702 aaKnown RBP16.17■□□□□ 0.18
SMAD9-204ENST00000483941 SLFN13Q68D06 897 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms