RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 PIK3AP1Q6ZUJ8 805 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 KLHL7Q8IXQ5 586 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 PDZD8Q8NEN9 1154 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 FAM71BQ8TC56 605 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 SUCLG2Q96I99 432 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 ZNF496Q96IT1 587 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-224ENST00000478916 HOMER3Q9NSC5 361 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 CLTAP09496 248 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 LIG3P49916 1009 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 FANCCQ00597 558 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 MAPKAPK5Q8IW41 473 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 HACE1Q8IYU2 909 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 PLIN2Q99541 437 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 KCNG1Q9UIX4 513 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 ADGBQ8N7X0 1667 aa9.73□□□□□ -0.85
SYNE1-224ENST00000478916 FRMD3A2A2Y4 597 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 CEP104O60308 925 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 SESN3P58005 492 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 MAIP1Q8WWC4 291 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 MRPL46Q9H2W6 279 aaKnown RBP9.72□□□□□ -0.85
SYNE1-224ENST00000478916 MYO5CQ9NQX4 1742 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 PHEXP78562 749 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 RPS6KA2Q15349 733 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 MFSD14BQ5SR56 506 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 NLGN1Q8N2Q7 840 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 KBTBD3Q8NAB2 608 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 TGFBRAP1Q8WUH2 860 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 TRAF5O00463 557 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 RNF8O76064 485 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 TBC1D8O95759 1140 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 NONOQ15233 471 aaKnown RBP eCLIP9.72□□□□□ -0.85
SYNE1-224ENST00000478916 SDCCAG3Q96C92 435 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 BCL2L12Q9HB09 334 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 PNMA2Q9UL42 364 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 SYNRGQ9UMZ2 1314 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 PHKG2P15735 406 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 KRT9P35527 623 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 SF3A3Q12874 501 aaKnown RBP eCLIP9.72□□□□□ -0.85
SYNE1-224ENST00000478916 NSMFQ6X4W1 530 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 DCPSQ96C86 337 aaKnown RBP9.72□□□□□ -0.85
SYNE1-224ENST00000478916 USP40Q9NVE5 1235 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 ANKFY1Q9P2R3 1169 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 SLC27A2O14975 620 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 APOEP02649 317 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 QTRT2Q9H974 415 aaKnown RBP9.72□□□□□ -0.85
SYNE1-224ENST00000478916 NPHP4O75161 1426 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-224ENST00000478916 EFCAB6Q5THR3 1501 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 NCAPH2Q6IBW4 605 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 NLRX1Q86UT6 975 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 CPXCR1Q8N123 301 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 CHURC1Q8WUH1 139 aa9.72□□□□□ -0.85
SYNE1-224ENST00000478916 V9GY48 417 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-224ENST00000478916 ZBTB7BO15156 539 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-224ENST00000478916 EIF4A1P60842 406 aaKnown RBP9.71□□□□□ -0.85
SYNE1-224ENST00000478916 LCA5Q86VQ0 697 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 ANKRD42Q8N9B4 389 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 KDM5AP29375 1690 aaKnown RBP9.71□□□□□ -0.85
SYNE1-224ENST00000478916 SAMD9Q5K651 1589 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 A0A1B0GVL5 298 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 CCDC105Q8IYK2 499 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 ABTB1Q969K4 478 aaPredicted RBP9.71□□□□□ -0.85
SYNE1-224ENST00000478916 MLH3Q9UHC1 1453 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 ERBB4Q15303 1308 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 ZNF532Q9HCE3 1301 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 TMEM94Q12767 1356 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 KIAA0232Q92628 1395 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 CTNNA1P35221 906 aaKnown RBP9.71□□□□□ -0.85
SYNE1-224ENST00000478916 VPS41P49754 854 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 GTF2IP78347 998 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 RPS6KA1Q15418 735 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 CCDC24Q8N4L8 307 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 BCAS4Q8TDM0 211 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 MED4Q9NPJ6 270 aa9.71□□□□□ -0.85
SYNE1-224ENST00000478916 RPSAP08865 295 aaKnown RBP9.71□□□□□ -0.86
SYNE1-224ENST00000478916 USH1GQ495M9 461 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 FAM196AQ6ZSG2 479 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 ARHGAP27Q6ZUM4 889 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 CFAP61Q8NHU2 1237 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 NLRP7Q8WX94 980 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 RNF34Q969K3 372 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 DRC3Q9H069 523 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 DDX41Q9UJV9 622 aaKnown RBP9.71□□□□□ -0.86
SYNE1-224ENST00000478916 PRDM1O75626 825 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 RFX1P22670 979 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 RXRBP28702 533 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 ESRRGP62508 458 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 MCTP2Q6DN12 878 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 KDRP35968 1356 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 PLEKHG1Q9ULL1 1385 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 DAPK3O43293 454 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 SERPINB6P35237 376 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 ARHGAP4P98171 946 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 GNPTABQ3T906 1256 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 EFCAB13Q8IY85 973 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 KLHDC4Q8TBB5 520 aa9.71□□□□□ -0.86
SYNE1-224ENST00000478916 PDE4DQ08499 809 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 GINS2Q9Y248 185 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 NEURL1BA8MQ27 555 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 EVI5O60447 810 aa9.7□□□□□ -0.86
SYNE1-224ENST00000478916 PHBP35232 272 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms