RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 PDCL3Q9H2J4 239 aa13.93□□□□□ -0.18
PTPRF-212ENST00000477970 SEMA3FQ13275 785 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 CCDC112Q8NEF3 446 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 GSDMAQ96QA5 445 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 PCDHA4Q9UN74 947 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-212ENST00000477970 PALM3A6NDB9 673 aaPredicted RBP13.92□□□□□ -0.18
PTPRF-212ENST00000477970 FAM205CA6NFA0 338 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 UFL1O94874 794 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 PLCD1P51178 756 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 NLRP5P59047 1200 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 VSTM4Q8IW00 320 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 CCDC148Q8NFR7 591 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 FOXN1O15353 648 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 NRDCO43847 1150 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 PRR29P0C7W0 189 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 RASA1P20936 1047 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 ARMCX5Q6P1M9 558 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 FILIP1Q7Z7B0 1213 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 SP8Q8IXZ3 490 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 CCAR2Q8N163 923 aaKnown RBP13.92□□□□□ -0.18
PTPRF-212ENST00000477970 FBXW7Q969H0 707 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 SPZ1Q9BXG8 430 aa13.92□□□□□ -0.18
PTPRF-212ENST00000477970 BTDP43251 543 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 GRIK5Q16478 980 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 TMC6Q7Z403 805 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 BLIDQ8IZY5 108 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 NEDD1Q8NHV4 660 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 TBC1D16Q8TBP0 767 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 TMX1Q9H3N1 280 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 MKNK2Q9HBH9 465 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 TSPY3P0CV98 308 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 TSPY8P0CW00 308 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 LMOD1P29536 600 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-212ENST00000477970 LONP1P36776 959 aaKnown RBP13.91□□□□□ -0.18
PTPRF-212ENST00000477970 UBASH3AP57075 661 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 DPYDQ12882 1025 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 ARID5BQ14865 1188 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 E2F4Q16254 413 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 SPECC1Q5M775 1068 aa13.91□□□□□ -0.18
PTPRF-212ENST00000477970 ZNF444Q8N0Y2 327 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-212ENST00000477970 SYMPKQ92797 1274 aaKnown RBP13.91□□□□□ -0.18
PTPRF-212ENST00000477970 GREB1LQ9C091 1923 aaPredicted RBP13.91□□□□□ -0.18
PTPRF-212ENST00000477970 SFPQP23246 707 aaKnown RBP eCLIP13.9□□□□□ -0.18
PTPRF-212ENST00000477970 RHBDL3P58872 404 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 DIXDC1Q155Q3 683 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 TPD52L1Q16890 204 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-212ENST00000477970 FCHSD1Q86WN1 690 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 C4orf32Q8N8J7 132 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 TGFBRAP1Q8WUH2 860 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 PAGE5Q96GU1 130 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 A0A087X0B3 334 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 LAD1O00515 517 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 CCP110O43303 1012 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 TNNT1P13805 278 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 FLT1P17948 1338 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 MYO3BQ8WXR4 1341 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 ATP1A3P13637 1013 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 TBX2Q13207 712 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-212ENST00000477970 PTGDRQ13258 359 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 HSP90AA2PQ14568 343 aaPredicted RBP13.9□□□□□ -0.18
PTPRF-212ENST00000477970 NLGN2Q8NFZ4 835 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 FANCLQ9NW38 375 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 BARHL2Q9NY43 387 aa13.9□□□□□ -0.18
PTPRF-212ENST00000477970 WNT7AO00755 349 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 ORC2Q13416 577 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-212ENST00000477970 USP49Q70CQ1 688 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 DYNLL2Q96FJ2 89 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 TMEM47Q9BQJ4 181 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 hCG_1642624A0A1W2PR95 340 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 hCG_1984214I3L0E3 225 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 RIOK3O14730 519 aaKnown RBP13.89□□□□□ -0.19
PTPRF-212ENST00000477970 SERPINC1P01008 464 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 ZNF713Q8N859 430 aaPredicted RBP13.89□□□□□ -0.19
PTPRF-212ENST00000477970 COA1Q9GZY4 146 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 POLLQ9UGP5 575 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 MYH8P13535 1937 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 PRPHP41219 470 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 CDK8P49336 464 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 ISM2Q6H9L7 571 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 IQUBQ8NA54 791 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 EPSTI1Q96J88 318 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 JAG2Q9Y219 1238 aa13.89□□□□□ -0.19
PTPRF-212ENST00000477970 DCAF8L1A6NGE4 600 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 STXBP3O00186 592 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 CUL4BQ13620 913 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 ZNF174Q15697 407 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 CEP135Q66GS9 1140 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 PDXDC2PQ6P474 469 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 PIK3AP1Q6ZUJ8 805 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 TEX11Q8IYF3 940 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 TAOK2Q9UL54 1235 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 ZNF646O15015 1829 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-212ENST00000477970 MYL1P05976 194 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 FMR1Q06787 632 aaKnown RBP eCLIP13.88□□□□□ -0.19
PTPRF-212ENST00000477970 CCDC12Q8WUD4 166 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-212ENST00000477970 DHX58Q96C10 678 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 C16orf45Q96MC5 204 aaPredicted RBP13.88□□□□□ -0.19
PTPRF-212ENST00000477970 ATP6V0A2Q9Y487 856 aa13.88□□□□□ -0.19
PTPRF-212ENST00000477970 FER1L6Q2WGJ9 1857 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms