RNA–Protein interactions for RNA: ENST00000477461.1

UBR3-209, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 4

Gene UBR3, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-209ENST00000477461 ZPBP2Q6X784 338 aa7.17□□□□□ -1.26
UBR3-209ENST00000477461 HS2ST1Q7LGA3 356 aa7.17□□□□□ -1.26
UBR3-209ENST00000477461 WAPLQ7Z5K2 1190 aa7.17□□□□□ -1.26
UBR3-209ENST00000477461 SPPL2CQ8IUH8 684 aa7.17□□□□□ -1.26
UBR3-209ENST00000477461 GMIPQ9P107 970 aa7.17□□□□□ -1.26
UBR3-209ENST00000477461 ROBO2Q9HCK4 1378 aa7.17□□□□□ -1.26
UBR3-209ENST00000477461 FAM86C2PA6NEL3 165 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 MEIS1O00470 390 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 APOBRQ0VD83 1088 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 KCNA10Q16322 511 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 NBPF9Q3BBW0 867 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 LILRA2Q8N149 483 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 ATG4CQ96DT6 458 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 TCTN2Q96GX1 697 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 SGPP1Q9BX95 441 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 HDAC8Q9BY41 377 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.16□□□□□ -1.26
UBR3-209ENST00000477461 KCNQ5Q9NR82 932 aa7.16□□□□□ -1.26
UBR3-209ENST00000477461 USP2O75604 605 aaPredicted RBP7.15□□□□□ -1.26
UBR3-209ENST00000477461 ATE1O95260 518 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 RNF4P78317 190 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 DUSP4Q13115 394 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 MRPL58Q14197 206 aaKnown RBP7.15□□□□□ -1.26
UBR3-209ENST00000477461 TMEM87AQ8NBN3 555 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 SYTL5Q8TDW5 730 aaPredicted RBP7.15□□□□□ -1.26
UBR3-209ENST00000477461 LINC01599Q8WXQ3 324 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 INTS4Q96HW7 963 aaKnown RBP7.15□□□□□ -1.26
UBR3-209ENST00000477461 SLC26A8Q96RN1 970 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 G6PC3Q9BUM1 346 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 LRRC3Q9BY71 257 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 MCOLN1Q9GZU1 580 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 SLC6A17Q9H1V8 727 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 TCFL5Q9UL49 500 aa7.15□□□□□ -1.26
UBR3-209ENST00000477461 YBX2Q9Y2T7 364 aaKnown RBP7.15□□□□□ -1.26
UBR3-209ENST00000477461 MYOCOSA0A1B0GUC4 107 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 PRAMEF1O95521 474 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 EFEMP2O95967 443 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 SYPP08247 313 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 NR0B2Q15466 257 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 SLC14A2Q15849 920 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 NLRC3Q7RTR2 1065 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 ANKS4BQ8N8V4 417 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 ENOX1Q8TC92 643 aaKnown RBP7.14□□□□□ -1.27
UBR3-209ENST00000477461 NKD1Q969G9 470 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 PRDM14Q9GZV8 571 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 IRF2BPLQ9H1B7 796 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 CNNM2Q9H8M5 875 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 EHMT1Q9H9B1 1298 aa7.14□□□□□ -1.27
UBR3-209ENST00000477461 CWC22Q9HCG8 908 aaKnown RBP7.14□□□□□ -1.27
UBR3-209ENST00000477461 NOTOA8MTQ0 251 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 CLEC3AO75596 197 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 SDHBP21912 280 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 PCBP3P57721 371 aaKnown RBP7.13□□□□□ -1.27
UBR3-209ENST00000477461 CHRNEQ04844 493 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 CDCP2Q5VXM1 449 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 RNF111Q6ZNA4 994 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 CEP128Q6ZU80 1094 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 TMEM192Q8IY95 271 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 DAGLBQ8NCG7 672 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 SHISA4Q96DD7 197 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 EAF1Q96JC9 268 aaPredicted RBP7.13□□□□□ -1.27
UBR3-209ENST00000477461 CD320Q9NPF0 282 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 FBXL21Q9UKT6 434 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 ZNF281Q9Y2X9 895 aa7.13□□□□□ -1.27
UBR3-209ENST00000477461 NUAK1O60285 661 aa7.12□□□□□ -1.27
UBR3-209ENST00000477461 GLDCP23378 1020 aa7.12□□□□□ -1.27
UBR3-209ENST00000477461 KRTAP19-4Q3LI73 84 aa7.12□□□□□ -1.27
UBR3-209ENST00000477461 ADGRF1Q5T601 910 aa7.12□□□□□ -1.27
UBR3-209ENST00000477461 CIAPIN1Q6FI81 312 aa7.12□□□□□ -1.27
UBR3-209ENST00000477461 IRF2BP1Q8IU81 584 aa7.12□□□□□ -1.27
UBR3-209ENST00000477461 ZNF655Q8N720 491 aaPredicted RBP7.12□□□□□ -1.27
UBR3-209ENST00000477461 TMEM82A0PJX8 343 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 MED14OSP0DP75 135 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 NME1P15531 152 aaKnown RBP7.11□□□□□ -1.27
UBR3-209ENST00000477461 ZNF165P49910 485 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 LINC00310P59036 64 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 DLG4P78352 724 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 KIR3DS1Q14943 382 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 SNX17Q15036 470 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 SPON2Q9BUD6 331 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 KRTAP4-7Q9BYR0 210 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 MKRN2Q9H000 416 aaKnown RBP7.11□□□□□ -1.27
UBR3-209ENST00000477461 GFOD1Q9NXC2 390 aa7.11□□□□□ -1.27
UBR3-209ENST00000477461 LDLRAD1Q5T700 205 aa7.1□□□□□ -1.27
UBR3-209ENST00000477461 NLRX1Q86UT6 975 aa7.1□□□□□ -1.27
UBR3-209ENST00000477461 REXO1Q8N1G1 1221 aaKnown RBP7.1□□□□□ -1.27
UBR3-209ENST00000477461 LINC00116Q8NCU8 138 aa7.1□□□□□ -1.27
UBR3-209ENST00000477461 MAP6Q96JE9 813 aa7.1□□□□□ -1.27
UBR3-209ENST00000477461 HHIPL1Q96JK4 782 aa7.1□□□□□ -1.27
UBR3-209ENST00000477461 SLC6A18Q96N87 628 aa7.1□□□□□ -1.27
UBR3-209ENST00000477461 SLC9A7Q96T83 725 aa7.1□□□□□ -1.27
UBR3-209ENST00000477461 ZNF552Q9H707 407 aaPredicted RBP7.1□□□□□ -1.27
UBR3-209ENST00000477461 CHST7Q9NS84 486 aa7.1□□□□□ -1.27
UBR3-209ENST00000477461 OR14I1A6ND48 311 aa7.09□□□□□ -1.27
UBR3-209ENST00000477461 SIGLEC6O43699 453 aa7.09□□□□□ -1.27
UBR3-209ENST00000477461 ZNF16P17020 682 aaPredicted RBP7.09□□□□□ -1.27
UBR3-209ENST00000477461 RAD51AP2Q09MP3 1159 aa7.09□□□□□ -1.27
UBR3-209ENST00000477461 BBS9Q3SYG4 887 aa7.09□□□□□ -1.27
UBR3-209ENST00000477461 SIAH1Q8IUQ4 282 aa7.09□□□□□ -1.27
UBR3-209ENST00000477461 KIAA0825Q8IV33 1275 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms