RNA–Protein interactions for RNA: ENST00000476772.5

VEGFA-211, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 1,683 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-211ENST00000476772 DCAF4Q8WV16 495 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 DCPSQ96C86 337 aaKnown RBP33.33■■■□□ 2.93
VEGFA-211ENST00000476772 ZNF341Q9BYN7 854 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 SSC5DA1L4H1 1573 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 SCN4AP35499 1836 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 F5H6K3 240 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 MMP1P03956 469 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 VEGFAP15692 232 aaPredicted RBP33.33■■■□□ 2.93
VEGFA-211ENST00000476772 XBP1P17861 261 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 ECE1P42892 770 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 KLRC3Q07444 240 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 GPATCH4Q5T3I0 446 aaKnown RBP33.33■■■□□ 2.93
VEGFA-211ENST00000476772 ACER1Q8TDN7 264 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 SYNPO2Q9UMS6 1093 aa33.33■■■□□ 2.93
VEGFA-211ENST00000476772 KCTD1Q719H9 257 aa33.32■■■□□ 2.92
VEGFA-211ENST00000476772 LMBRD1Q9NUN5 540 aa33.32■■■□□ 2.92
VEGFA-211ENST00000476772 NDUFB10O96000 172 aa33.31■■■□□ 2.92
VEGFA-211ENST00000476772 SLC1A4P43007 532 aa33.31■■■□□ 2.92
VEGFA-211ENST00000476772 RIOX1Q9H6W3 641 aa33.31■■■□□ 2.92
VEGFA-211ENST00000476772 CTNND1O60716 968 aaKnown RBP33.3■■■□□ 2.92
VEGFA-211ENST00000476772 PRPF40AO75400 957 aaKnown RBP33.3■■■□□ 2.92
VEGFA-211ENST00000476772 PTMSP20962 102 aa33.3■■■□□ 2.92
VEGFA-211ENST00000476772 KRT85P78386 507 aa33.3■■■□□ 2.92
VEGFA-211ENST00000476772 TTBK2Q6IQ55 1244 aa33.3■■■□□ 2.92
VEGFA-211ENST00000476772 CCDC84Q86UT8 332 aaPredicted RBP33.3■■■□□ 2.92
VEGFA-211ENST00000476772 TMX2Q9Y320 296 aa33.3■■■□□ 2.92
VEGFA-211ENST00000476772 WDR90Q96KV7 1748 aa33.3■■■□□ 2.92
VEGFA-211ENST00000476772 ADM5C9JUS6 153 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 FIBPO43427 364 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 INPP5BP32019 993 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 BRAPQ7Z569 592 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 SULF1Q8IWU6 871 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 VAT1LQ9HCJ6 419 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 ISY1Q9ULR0 285 aaKnown RBP33.29■■■□□ 2.92
VEGFA-211ENST00000476772 DOCK1Q14185 1865 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 SAFBQ15424 915 aaKnown RBP eCLIP33.29■■■□□ 2.92
VEGFA-211ENST00000476772 GMCL1Q96IK5 515 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 PHF20Q9BVI0 1012 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 ZNF112Q9UJU3 913 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 FZD1Q9UP38 647 aa33.29■■■□□ 2.92
VEGFA-211ENST00000476772 POTECB2RU33 542 aa33.28■■■□□ 2.92
VEGFA-211ENST00000476772 GNL2Q13823 731 aaKnown RBP33.28■■■□□ 2.92
VEGFA-211ENST00000476772 SUPT20HL1Q3ZLR7 823 aa33.28■■■□□ 2.92
VEGFA-211ENST00000476772 DLK2Q6UY11 383 aa33.28■■■□□ 2.92
VEGFA-211ENST00000476772 HOMER1Q86YM7 354 aa33.28■■■□□ 2.92
VEGFA-211ENST00000476772 DIS3L2Q8IYB7 885 aaKnown RBP33.28■■■□□ 2.92
VEGFA-211ENST00000476772 GPKOWQ92917 476 aaPredicted RBP eCLIP33.28■■■□□ 2.929e-7■□□□□ 11
VEGFA-211ENST00000476772 RRP36Q96EU6 259 aaKnown RBP33.28■■■□□ 2.92
VEGFA-211ENST00000476772 TAF1DQ9H5J8 278 aaPredicted RBP33.28■■■□□ 2.92
VEGFA-211ENST00000476772 GINM1Q9NU53 330 aa33.28■■■□□ 2.92
VEGFA-211ENST00000476772 IQCA1LA6NCM1 817 aa33.27■■■□□ 2.92
VEGFA-211ENST00000476772 USP48Q86UV5 1035 aa33.27■■■□□ 2.92
VEGFA-211ENST00000476772 PIGSQ96S52 555 aa33.27■■■□□ 2.92
VEGFA-211ENST00000476772 WRNIP1Q96S55 665 aa33.27■■■□□ 2.92
VEGFA-211ENST00000476772 GLIS2Q9BZE0 524 aaPredicted RBP33.27■■■□□ 2.92
VEGFA-211ENST00000476772 TFIP11Q9UBB9 837 aaKnown RBP33.27■■■□□ 2.92
VEGFA-211ENST00000476772 U2AF2P26368 475 aaKnown RBP eCLIP33.26■■■□□ 2.922e-48■□□□□ 11.2
VEGFA-211ENST00000476772 SLC16A2P36021 539 aa33.26■■■□□ 2.92
VEGFA-211ENST00000476772 TMEM87AQ8NBN3 555 aa33.26■■■□□ 2.92
VEGFA-211ENST00000476772 NUP88Q99567 741 aaPredicted RBP33.26■■■□□ 2.92
VEGFA-211ENST00000476772 BTBD18B2RXH4 712 aa33.26■■■□□ 2.91
VEGFA-211ENST00000476772 WWC2Q6AWC2 1192 aa33.26■■■□□ 2.91
VEGFA-211ENST00000476772 KRT26Q7Z3Y9 468 aa33.26■■■□□ 2.91
VEGFA-211ENST00000476772 ZC3H15Q8WU90 426 aaKnown RBP33.26■■■□□ 2.91
VEGFA-211ENST00000476772 GOPCQ9HD26 462 aa33.26■■■□□ 2.91
VEGFA-211ENST00000476772 SEC63Q9UGP8 760 aaKnown RBP33.26■■■□□ 2.91
VEGFA-211ENST00000476772 KIAA1755Q5JYT7 1200 aa33.25■■■□□ 2.91
VEGFA-211ENST00000476772 ADGRF4Q8IZF3 695 aa33.25■■■□□ 2.91
VEGFA-211ENST00000476772 SPICE1Q8N0Z3 855 aa33.25■■■□□ 2.91
VEGFA-211ENST00000476772 ANP32EQ9BTT0 268 aa33.25■■■□□ 2.91
VEGFA-211ENST00000476772 SH2D4AQ9H788 454 aa33.25■■■□□ 2.91
VEGFA-211ENST00000476772 EAPPQ56P03 285 aaPredicted RBP33.24■■■□□ 2.91
VEGFA-211ENST00000476772 HEATR3Q7Z4Q2 680 aa33.24■■■□□ 2.91
VEGFA-211ENST00000476772 OXER1Q8TDS5 423 aa33.24■■■□□ 2.91
VEGFA-211ENST00000476772 JMJD4Q9H9V9 463 aa33.24■■■□□ 2.91
VEGFA-211ENST00000476772 SH3GLB2Q9NR46 395 aa33.24■■■□□ 2.91
VEGFA-211ENST00000476772 BMP3P12645 472 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 MYSM1Q5VVJ2 828 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 SCYL3Q8IZE3 742 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 KLRG1Q96E93 195 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 ZNF396Q96N95 335 aaPredicted RBP33.23■■■□□ 2.91
VEGFA-211ENST00000476772 FOXP1Q9H334 677 aaPredicted RBP33.23■■■□□ 2.91
VEGFA-211ENST00000476772 VCPKMTQ9H867 229 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 TRAK2O60296 914 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 NPY5RQ15761 445 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 ZYXQ15942 572 aaKnown RBP33.23■■■□□ 2.91
VEGFA-211ENST00000476772 TYW1BQ6NUM6 668 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 ZKSCAN4Q969J2 545 aaPredicted RBP33.23■■■□□ 2.91
VEGFA-211ENST00000476772 BARHL2Q9NY43 387 aa33.23■■■□□ 2.91
VEGFA-211ENST00000476772 STXBP3O00186 592 aa33.22■■■□□ 2.91
VEGFA-211ENST00000476772 KRT2P35908 639 aa33.22■■■□□ 2.91
VEGFA-211ENST00000476772 NLRP5P59047 1200 aa33.22■■■□□ 2.91
VEGFA-211ENST00000476772 NR5A1Q13285 461 aa33.22■■■□□ 2.91
VEGFA-211ENST00000476772 NOSTRINQ8IVI9 506 aa33.22■■■□□ 2.91
VEGFA-211ENST00000476772 USP28Q96RU2 1077 aa33.22■■■□□ 2.91
VEGFA-211ENST00000476772 FTOQ9C0B1 505 aaKnown RBP eCLIP33.22■■■□□ 2.911e-19■□□□□ 9.7
VEGFA-211ENST00000476772 PRKG1Q13976 671 aa33.21■■■□□ 2.91
VEGFA-211ENST00000476772 CSPP1Q1MSJ5 1256 aa33.21■■■□□ 2.91
VEGFA-211ENST00000476772 ATL3Q6DD88 541 aa33.21■■■□□ 2.91
VEGFA-211ENST00000476772 SCAND2PQ9GZW5 306 aaPredicted RBP33.21■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms