RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 MYH1P12882 1939 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 IRS4O14654 1257 aaPredicted RBP9.47□□□□□ -0.89
VAPB-205ENST00000476395 NRDCO43847 1150 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 RPS6KA5O75582 802 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 ERLIN2O94905 339 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 VEGFAP15692 232 aaPredicted RBP9.47□□□□□ -0.89
VAPB-205ENST00000476395 TMEM67Q5HYA8 995 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 NCAPH2Q6IBW4 605 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 OTUD6BQ8N6M0 293 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 MAGEB6Q8N7X4 407 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 ZNF579Q8NAF0 562 aaKnown RBP9.47□□□□□ -0.89
VAPB-205ENST00000476395 CD248Q9HCU0 757 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 SRPRBQ9Y5M8 271 aaKnown RBP9.47□□□□□ -0.89
VAPB-205ENST00000476395 PPP1R3GB7ZBB8 358 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 ARHGAP6O43182 974 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 AKNAD1Q5T1N1 836 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 SRGAP1Q7Z6B7 1085 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 EPSTI1Q96J88 318 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 FOXP1Q9H334 677 aaPredicted RBP9.47□□□□□ -0.89
VAPB-205ENST00000476395 PNPLA7Q6ZV29 1317 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 CCDC189A1A4V9 331 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 BRD3Q15059 726 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 FKBP15Q5T1M5 1219 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 EFCAB13Q8IY85 973 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 IGSF22Q8N9C0 903 aa9.47□□□□□ -0.89
VAPB-205ENST00000476395 ZSCAN12O43309 604 aa9.46□□□□□ -0.89
VAPB-205ENST00000476395 MYO1BO43795 1136 aa9.46□□□□□ -0.89
VAPB-205ENST00000476395 STX10O60499 249 aa9.46□□□□□ -0.89
VAPB-205ENST00000476395 PPFIA4O75335 1185 aa9.46□□□□□ -0.89
VAPB-205ENST00000476395 SWT1Q5T5J6 900 aaKnown RBP9.46□□□□□ -0.89
VAPB-205ENST00000476395 SPECC1LQ69YQ0 1117 aa9.46□□□□□ -0.89
VAPB-205ENST00000476395 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.46□□□□□ -0.89
VAPB-205ENST00000476395 KAT14Q9H8E8 782 aa9.46□□□□□ -0.89
VAPB-205ENST00000476395 LTBP4Q8N2S1 1624 aa9.46□□□□□ -0.89
VAPB-205ENST00000476395 GOLGB1Q14789 3259 aaKnown RBP9.46□□□□□ -0.9
VAPB-205ENST00000476395 CPP00450 1065 aa9.46□□□□□ -0.9
VAPB-205ENST00000476395 TUBB4AP04350 444 aa9.46□□□□□ -0.9
VAPB-205ENST00000476395 MRPS25P82663 173 aaKnown RBP9.46□□□□□ -0.9
VAPB-205ENST00000476395 PPP2R5AQ15172 486 aa9.46□□□□□ -0.9
VAPB-205ENST00000476395 TTF1Q15361 905 aaPredicted RBP9.46□□□□□ -0.9
VAPB-205ENST00000476395 PHF20Q9BVI0 1012 aa9.46□□□□□ -0.9
VAPB-205ENST00000476395 SLC24A3Q9HC58 644 aa9.46□□□□□ -0.9
VAPB-205ENST00000476395 ADD3Q9UEY8 706 aaKnown RBP9.46□□□□□ -0.9
VAPB-205ENST00000476395 TFR2Q9UP52 801 aa9.46□□□□□ -0.9
VAPB-205ENST00000476395 XDHP47989 1333 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 ANKRD18BA2A2Z9 1011 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 ATP6V1AP38606 617 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 PUM3Q15397 648 aaKnown RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 HSP90B2PQ58FF3 399 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 ZNF569Q5MCW4 686 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 SUSD4Q5VX71 490 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 SPTY2D1Q68D10 685 aaPredicted RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 SMYD4Q8IYR2 804 aaPredicted RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 LRRC15Q8TF66 581 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 LPIN2Q92539 896 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 ZNF330Q9Y3S2 320 aaPredicted RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 FAM169AQ9Y6X4 670 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 CDK5RAP2Q96SN8 1893 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 FRMD3A2A2Y4 597 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 COBLO75128 1261 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 CDKL5O76039 1030 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 BCAMP50895 628 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 SSRP1Q08945 709 aaKnown RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 PIK3R5Q8WYR1 880 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 TMOD3Q9NYL9 352 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 A0A087WUV0 522 aaPredicted RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 PDE8AO60658 829 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 PRPF6O94906 941 aaKnown RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 GYPCP04921 128 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 MYBL2P10244 700 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 PLCD1P51178 756 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 RBL2Q08999 1139 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 SLC35F6Q8N357 371 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 ACRBPQ8NEB7 543 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 RIOK1Q9BRS2 568 aaKnown RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 MKRN1Q9UHC7 482 aaKnown RBP9.45□□□□□ -0.9
VAPB-205ENST00000476395 RAB21Q9UL25 225 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 ADGRG1Q9Y653 693 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 SLC12A7Q9Y666 1083 aa9.45□□□□□ -0.9
VAPB-205ENST00000476395 IFIT3O14879 490 aaKnown RBP9.44□□□□□ -0.9
VAPB-205ENST00000476395 PRDM1O75626 825 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 FGRP09769 529 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 ARHGAP25P42331 645 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 TDO2P48775 406 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 FXR1P51114 621 aaKnown RBP eCLIP9.44□□□□□ -0.9
VAPB-205ENST00000476395 ERVK-24P63145 666 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 AKAP17AQ02040 695 aaKnown RBP9.44□□□□□ -0.9
VAPB-205ENST00000476395 KIF4BQ2VIQ3 1234 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 INTS5Q6P9B9 1019 aaKnown RBP9.44□□□□□ -0.9
VAPB-205ENST00000476395 CCDC82Q8N4S0 544 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 AFAP1L1Q8TED9 768 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 PAGE5Q96GU1 130 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 EP400Q96L91 3159 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 ZNF804BA4D1E1 1349 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 hCG_1642624A0A1W2PR95 340 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 PLEKHA8P1O95397 391 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 USP5P45974 858 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 SATB1Q01826 763 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 KIF6Q6ZMV9 814 aa9.44□□□□□ -0.9
VAPB-205ENST00000476395 FANCBQ8NB91 859 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms