RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 ADAMTSL4Q6UY14 1074 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 MCM10Q7L590 875 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 ATCAYQ86WG3 371 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 TMEM130Q8N3G9 435 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 SNED1Q8TER0 1413 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 TRAIPQ9BWF2 469 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 ADAM19Q9H013 955 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 NMRK2Q9NPI5 230 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 SALL4Q9UJQ4 1053 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 TRIM33Q9UPN9 1127 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 MAP3K15Q6ZN16 1313 aa5.44□□□□□ -1.54
VPS13D-206ENST00000476045 ABCC12Q96J65 1359 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 KLRG2A4D1S0 409 aaPredicted RBP5.43□□□□□ -1.54
VPS13D-206ENST00000476045 IQCA1LA6NCM1 817 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 A1BGP04217 495 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 CYP2E1P05181 493 aaPredicted RBP5.43□□□□□ -1.54
VPS13D-206ENST00000476045 HOXB7P09629 217 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 VEGFAP15692 232 aaPredicted RBP5.43□□□□□ -1.54
VPS13D-206ENST00000476045 NOS3P29474 1203 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 ATP11AP98196 1134 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 PARP10Q53GL7 1025 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 HSP90AB3PQ58FF7 597 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 TTC39BQ5VTQ0 682 aaPredicted RBP5.43□□□□□ -1.54
VPS13D-206ENST00000476045 TPTE2Q6XPS3 522 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 DZIP1LQ8IYY4 767 aaKnown RBP5.43□□□□□ -1.54
VPS13D-206ENST00000476045 RTKN2Q8IZC4 609 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 GJD3Q8N144 294 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 EDEM1Q92611 657 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 ZNF622Q969S3 477 aaKnown RBP eCLIP5.43□□□□□ -1.54
VPS13D-206ENST00000476045 PLEKHF1Q96S99 279 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 CHMP4AQ9BY43 222 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 PBX4Q9BYU1 374 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 PPP4R2Q9NY27 417 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 CNTN3Q9P232 1028 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 NIP7Q9Y221 180 aaKnown RBP eCLIP5.43□□□□□ -1.54
VPS13D-206ENST00000476045 LTBP1Q14766 1721 aa5.43□□□□□ -1.54
VPS13D-206ENST00000476045 FZD6O60353 706 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 FAM13AO94988 1023 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 ALDH1B1P30837 517 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 EIF4A1P60842 406 aaKnown RBP5.42□□□□□ -1.54
VPS13D-206ENST00000476045 FKBP4Q02790 459 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS13D-206ENST00000476045 CALD1Q05682 793 aaKnown RBP5.42□□□□□ -1.54
VPS13D-206ENST00000476045 WDR43Q15061 677 aaKnown RBP eCLIP5.42□□□□□ -1.54
VPS13D-206ENST00000476045 ECM1Q16610 540 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 FOXD4L6Q3SYB3 417 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-206ENST00000476045 CRY2Q49AN0 593 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 B4GALNT3Q6L9W6 998 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 FOXD4L3Q6VB84 417 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-206ENST00000476045 ZNF438Q7Z4V0 828 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 IL22RA1Q8N6P7 574 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 WFDC12Q8WWY7 111 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 PSMD1Q99460 953 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 MRPL18Q9H0U6 180 aaKnown RBP5.42□□□□□ -1.54
VPS13D-206ENST00000476045 TSPYL4Q9UJ04 414 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 MTMR7Q9Y216 660 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 TAF1P21675 1872 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 CDHR2Q9BYE9 1310 aa5.42□□□□□ -1.54
VPS13D-206ENST00000476045 F8W735 103 aaPredicted RBP5.41□□□□□ -1.54
VPS13D-206ENST00000476045 KCNQ3O43525 872 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 SMNDC1O75940 238 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS13D-206ENST00000476045 USP5P45974 858 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.41□□□□□ -1.54
VPS13D-206ENST00000476045 TMC4Q7Z404 712 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 PPP1R42Q7Z4L9 355 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 RPGRQ92834 1020 aaKnown RBP5.41□□□□□ -1.54
VPS13D-206ENST00000476045 MEGF10Q96KG7 1140 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 RASSF4Q9H2L5 321 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 SEMA6BQ9H3T3 888 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 USP16Q9Y5T5 823 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 ZBED9Q6R2W3 1325 aa5.41□□□□□ -1.54
VPS13D-206ENST00000476045 HSP90B1P14625 803 aaKnown RBP5.4□□□□□ -1.54
VPS13D-206ENST00000476045 PCSK2P16519 638 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 HOXA10P31260 410 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-206ENST00000476045 EHHADHQ08426 723 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 MTMR3Q13615 1198 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 DCTN1Q14203 1278 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 XP32Q5T750 250 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 GDF6Q6KF10 455 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-206ENST00000476045 LDHDQ86WU2 507 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 JMYQ8N9B5 988 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 C1orf127Q8N9H9 656 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 GALNT11Q8NCW6 608 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 SNX29Q8TEQ0 813 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 WNT8BQ93098 351 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 SPACA7Q96KW9 195 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 TMX4Q9H1E5 349 aaPredicted RBP5.4□□□□□ -1.54
VPS13D-206ENST00000476045 VPS33BQ9H267 617 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 DZANK1Q9NVP4 752 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 POLIQ9UNA4 740 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 PPME1Q9Y570 386 aa5.4□□□□□ -1.54
VPS13D-206ENST00000476045 DUOX1Q9NRD9 1551 aa5.39□□□□□ -1.55
VPS13D-206ENST00000476045 PRAMEF22A3QJZ6 481 aa5.39□□□□□ -1.55
VPS13D-206ENST00000476045 ICMTO60725 284 aa5.39□□□□□ -1.55
VPS13D-206ENST00000476045 NTSR2O95665 410 aa5.39□□□□□ -1.55
VPS13D-206ENST00000476045 PTPRAP18433 802 aa5.39□□□□□ -1.55
VPS13D-206ENST00000476045 EPHA1P21709 976 aa5.39□□□□□ -1.55
VPS13D-206ENST00000476045 CDC27P30260 824 aa5.39□□□□□ -1.55
VPS13D-206ENST00000476045 IARSP41252 1262 aaKnown RBP5.39□□□□□ -1.55
VPS13D-206ENST00000476045 TMPOP42166 694 aaKnown RBP5.39□□□□□ -1.55
VPS13D-206ENST00000476045 RIPK4P57078 832 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms